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大鼠颌下腺丝氨酸蛋白酶,托宁。1.8埃分辨率下的结构解析与精修。

Rat submaxillary gland serine protease, tonin. Structure solution and refinement at 1.8 A resolution.

作者信息

Fujinaga M, James M N

机构信息

Department of Biochemistry, University of Alberta, Edmonton, Canada.

出版信息

J Mol Biol. 1987 May 20;195(2):373-96. doi: 10.1016/0022-2836(87)90658-9.

Abstract

Tonin is a mammalian serine protease that is capable of generating the vasoconstrictive agent, angiotensin II, directly from its precursor protein, angiotensinogen, a process that normally requires two enzymes, renin and angiotensin-converting enzyme. The X-ray crystallographic structure determination and refinement of tonin at 1.8 A resolution and the analysis of the resulting model are reported. The initial phases were obtained by the method of molecular replacement using as the search model the structure of bovine trypsin. The refined model of tonin consists of 227 amino acid residues out of the 235 in the complete molecule, 149 water molecules, and one zinc ion. The R-factor (R = sigma Fo - Fc/sigma Fo) is 0.196 for the 14,997 measured data between 8 and 1.8 A resolution with I greater than or equal to sigma (I). It is estimated that the overall root-mean-square error in the coordinates is about 0.3 A. The structure of tonin that has been determined is not in its active conformation, but one that has been perturbed by the binding of Zn2+ in the active site. Zn2+ was included in the buffer to aid the crystallization. Nevertheless, the structure of tonin that is described is for the most part similar to its native form as indicated by the close tertiary structural homology with kallikrein. The differences in the structures of the two enzymes are concentrated in several loop regions; these structural differences are probably responsible for the differences in their reactivities and specificities.

摘要

托宁是一种哺乳动物丝氨酸蛋白酶,它能够直接从其前体蛋白血管紧张素原生成血管收缩剂血管紧张素II,而这一过程通常需要两种酶,即肾素和血管紧张素转换酶。本文报道了托宁在1.8埃分辨率下的X射线晶体学结构测定、精修以及对所得模型的分析。初始相位通过分子置换法获得,使用牛胰蛋白酶的结构作为搜索模型。精修后的托宁模型由完整分子中235个氨基酸残基中的227个、149个水分子和一个锌离子组成。对于8至1.8埃分辨率下的14997个测量数据(I大于或等于σ(I)),R因子(R = σ|Fo - Fc|/σFo)为0.196。据估计,坐标中的整体均方根误差约为0.3埃。已确定的托宁结构并非其活性构象,而是一种因活性位点中Zn2+的结合而受到扰动的构象。在缓冲液中加入Zn2+有助于结晶。然而,如与激肽释放酶的紧密三级结构同源性所示,所描述的托宁结构在很大程度上与其天然形式相似。这两种酶结构上的差异集中在几个环区;这些结构差异可能是它们反应性和特异性差异的原因。

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