Facultad de Ciencias Químicas. Av. Universidad s/n, Ciudad Universitaria, San Nicolás de los Garza, Universidad Autónoma de Nuevo León, San Nicolás de los Garza, Nuevo León, 64451, México.
Centro de Biotecnología Genómica, Instituto Politécnico Nacional, Boulevard del Maestro, s/n, Esq. Elías Piña, Reynosa, Tamualipas, Mexico, 88710.
J Mol Model. 2017 Mar;23(3):85. doi: 10.1007/s00894-017-3256-5. Epub 2017 Feb 18.
In this work, through a docking analysis of compounds from the ZINC chemical library on human β-tubulin using high performance computer cluster, we report new polycyclic aromatic compounds that bind with high energy on the colchicine binding site of β-tubulin, suggesting three new key amino acids. However, molecular dynamic analysis showed low stability in the interaction between ligand and receptor. Results were confirmed experimentally in in vitro and in vivo models that suggest that molecular dynamics simulation is the best option to find new potential β-tubulin inhibitors. Graphical abstract Bennett's acceptance ratio (BAR) method.
在这项工作中,我们通过使用高性能计算机集群对 ZINC 化学文库中的化合物与人源β-微管蛋白进行对接分析,报告了新的多环芳烃化合物,这些化合物与β-微管蛋白的秋水仙碱结合位点具有高能量结合,提示了三个新的关键氨基酸。然而,分子动力学分析显示配体与受体之间的相互作用稳定性较低。体外和体内模型的实验结果证实了这一点,这表明分子动力学模拟是寻找新的潜在β-微管蛋白抑制剂的最佳选择。