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[基因组学方法如何助力对DNA复制起始的理解]

[How genomic approaches help the understanding of the initiation of DNA replication].

作者信息

Miotto Benoit

机构信息

Inserm U1016, Institut Cochin, Paris, France; CNRS, UMR8104, Paris, France - Université Paris Descartes, Sorbonne Paris Cité, 24, rue du Faubourg Saint-Jacques, 75014 Paris, France.

出版信息

Med Sci (Paris). 2017 Feb;33(2):143-150. doi: 10.1051/medsci/20173302009. Epub 2017 Feb 27.

DOI:10.1051/medsci/20173302009
PMID:28240205
Abstract

Eukaryotic DNA replication starts at multiple sites distributed throughout the genome called origins of replication. The identification of the position of these origins in the genome, as well as the description of their sequence features and chromatin structure, have been the center of many studies over the last years. A handful of sophisticated methods has been developed to capture replication initiation events, to detect replication factors binding sites onto the chromatin and to computationally analyze these data at the genome scale. Yet, we remain far from fully understanding how these origins of replication are specified in the genome and how DNA replication initiation is regulated. The aim of this review is to provide the reader with a detailed and curated list of the latest findings regarding the nature of origins of replication in the human genome.

摘要

真核生物的DNA复制起始于基因组中分布在各处的多个位点,这些位点被称为复制起点。在过去几年里,确定这些起点在基因组中的位置,以及描述它们的序列特征和染色质结构,一直是众多研究的核心。人们已经开发出了一些复杂的方法来捕捉复制起始事件,检测复制因子在染色质上的结合位点,并在基因组尺度上对这些数据进行计算分析。然而,我们距离完全理解这些复制起点在基因组中是如何被确定的,以及DNA复制起始是如何被调控的,仍有很大差距。这篇综述的目的是为读者提供一份详细且经过精心整理的清单,列出有关人类基因组中复制起点性质的最新研究发现。

相似文献

1
[How genomic approaches help the understanding of the initiation of DNA replication].[基因组学方法如何助力对DNA复制起始的理解]
Med Sci (Paris). 2017 Feb;33(2):143-150. doi: 10.1051/medsci/20173302009. Epub 2017 Feb 27.
2
Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure.通过对染色质结构的全基因组分析揭示真核 DNA 复制起点的多样性。
PLoS Genet. 2010 Sep 2;6(9):e1001092. doi: 10.1371/journal.pgen.1001092.
3
DNA replication origins, ORC/DNA interaction, and assembly of pre-replication complex in eukaryotes.真核生物的 DNA 复制起点、ORC/DNA 相互作用和前复制复合物的组装。
Acta Biochim Biophys Sin (Shanghai). 2010 Jul;42(7):433-9. doi: 10.1093/abbs/gmq048. Epub 2010 Jun 9.
4
The dynamics of eukaryotic replication initiation: origin specificity, licensing, and firing at the single-molecule level.真核生物复制起始的动力学:单分子水平上的起始点特异性、许可和激活
Mol Cell. 2015 May 7;58(3):483-94. doi: 10.1016/j.molcel.2015.03.017. Epub 2015 Apr 23.
5
Forced binding of the origin of replication complex to chromosomal sites in Drosophila S2 cells creates an origin of replication.在果蝇 S2 细胞中,通过强制复制起始复合物与染色体结合,创造出一个复制起始点。
J Cell Sci. 2012 Feb 15;125(Pt 4):965-72. doi: 10.1242/jcs.094409. Epub 2012 Mar 15.
6
Evaluating genome-scale approaches to eukaryotic DNA replication.评估真核生物 DNA 复制的基因组规模方法。
Nat Rev Genet. 2010 Oct;11(10):673-84. doi: 10.1038/nrg2830. Epub 2010 Sep 1.
7
DNA replication: the unbearable lightness of origins.DNA复制:起始点难以承受之轻。
EMBO Rep. 2006 Aug;7(8):779-81. doi: 10.1038/sj.embor.7400766.
8
Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast.裂殖酵母中前复制复合体(pre-RC)位点的全基因组定位及复制起始点的鉴定。
EMBO J. 2007 Mar 7;26(5):1327-39. doi: 10.1038/sj.emboj.7601585. Epub 2007 Feb 15.
9
Nucleosome occupancy as a novel chromatin parameter for replication origin functions.核小体占据率作为复制起点功能的一种新型染色质参数。
Genome Res. 2017 Feb;27(2):269-277. doi: 10.1101/gr.209940.116. Epub 2016 Nov 28.
10
Mechanisms and regulation of DNA replication initiation in eukaryotes.真核生物中DNA复制起始的机制与调控
Crit Rev Biochem Mol Biol. 2017 Apr;52(2):107-144. doi: 10.1080/10409238.2016.1274717. Epub 2017 Jan 17.

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