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在模拟细胞的拥挤溶液中泛素表面一级和二级泛素结合结构域足迹的鉴定。

Identification of primary and secondary UBA footprints on the surface of ubiquitin in cell-mimicking crowded solution.

作者信息

Munari Francesca, Bortot Andrea, Zanzoni Serena, D'Onofrio Mariapina, Fushman David, Assfalg Michael

机构信息

Department of Biotechnology, University of Verona, Italy.

Department of Chemistry and Biochemistry, University of Maryland, College Park, MD, USA.

出版信息

FEBS Lett. 2017 Apr;591(7):979-990. doi: 10.1002/1873-3468.12615. Epub 2017 Mar 19.

Abstract

Despite significant advancements in our understanding of ubiquitin-mediated signaling, the influence of the intracellular environment on the formation of transient ubiquitin-partner complexes remains poorly explored. In our work, we introduce macromolecular crowding as a first level of complexity toward the imitation of a cellular environment in the study of such interactions. Using NMR spectroscopy, we find that the stereospecific complex of ubiquitin and the ubiquitin-associated domain (UBA) is minimally perturbed by the crowding agent Ficoll. However, in addition to the primary canonical recognition patch on ubiquitin, secondary patches are identified, indicating that in cell-mimicking crowded solution, UBA contacts ubiquitin at multiple sites.

摘要

尽管我们对泛素介导的信号传导的理解有了显著进展,但细胞内环境对瞬时泛素-伴侣复合物形成的影响仍未得到充分探索。在我们的工作中,我们引入了大分子拥挤效应,作为在研究此类相互作用时模拟细胞环境的第一级复杂性。使用核磁共振光谱,我们发现泛素与泛素相关结构域(UBA)的立体特异性复合物受拥挤剂聚蔗糖的干扰最小。然而,除了泛素上的主要经典识别区域外,还发现了次要区域,这表明在模拟细胞的拥挤溶液中,UBA在多个位点与泛素接触。

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