Takahashi Yuichiro, Murakami Hirokazu, Akiyama Yusuke, Katoh Yasutake, Oma Yukako, Nishijima Hitoshi, Shibahara Kei-Ichi, Igarashi Kazuhiko, Harata Masahiko
Laboratory of Molecular Biology, Graduate School of Agricultural Science, Tohoku University Sendai, Japan.
Department of Biochemistry, Graduate School of Medicine, Tohoku University Sendai, Japan.
Front Genet. 2017 Feb 21;8:17. doi: 10.3389/fgene.2017.00017. eCollection 2017.
Nuclear actin family proteins, comprising of actin and actin-related proteins (Arps), are essential functional components of the multiple chromatin remodeling complexes. The INO80 chromatin remodeling complex, which is evolutionarily conserved and has roles in transcription, DNA replication and repair, consists of actin and actin-related proteins Arp4, Arp5, and Arp8. We generated Arp5 knockout (KO) and Arp8 KO cells from the human Nalm-6 pre-B cell line and used these KO cells to examine the roles of Arp5 and Arp8 in the transcriptional regulation mediated by the INO80 complex. In both of Arp5 KO and Arp8 KO cells, the oxidative stress-induced expression of gene, encoding for heme oxygenase-1 (HO-1), was significantly impaired. Consistent with these observations, chromatin immunoprecipitation (ChIP) assay revealed that oxidative stress caused an increase in the binding of the INO80 complex to the regulatory sites of in wild-type cells. The binding of INO80 complex to chromatin was reduced in Arp8 KO cells compared to that in the wild-type cells. On the other hand, the binding of INO80 complex to chromatin in Arp5 KO cells was similar to that in the wild-type cells even under the oxidative stress condition. However, both remodeling of chromatin at the regulatory sites and binding of a transcriptional activator to these sites were impaired in Arp5 KO cells, indicating that Arp5 is required for the activation of the INO80 complex. Collectively, these results suggested that these nuclear Arps play indispensable roles in the function of the INO80 chromatin remodeling complex.
核肌动蛋白家族蛋白由肌动蛋白和肌动蛋白相关蛋白(Arps)组成,是多种染色质重塑复合物的重要功能成分。INO80染色质重塑复合物在进化上保守,在转录、DNA复制和修复中发挥作用,由肌动蛋白和肌动蛋白相关蛋白Arp4、Arp5和Arp8组成。我们从人Nalm-6前B细胞系中生成了Arp5基因敲除(KO)和Arp8 KO细胞,并利用这些KO细胞研究Arp5和Arp8在INO80复合物介导的转录调控中的作用。在Arp5 KO和Arp8 KO细胞中,氧化应激诱导的编码血红素加氧酶-1(HO-1)的基因表达均显著受损。与这些观察结果一致,染色质免疫沉淀(ChIP)分析显示,氧化应激导致野生型细胞中INO80复合物与该基因调控位点的结合增加。与野生型细胞相比,Arp8 KO细胞中INO80复合物与染色质的结合减少。另一方面,即使在氧化应激条件下,Arp5 KO细胞中INO80复合物与染色质的结合也与野生型细胞相似。然而,Arp5 KO细胞中该基因调控位点的染色质重塑以及转录激活因子与这些位点的结合均受损,表明Arp5是INO80复合物激活所必需的。总体而言,这些结果表明这些核Arps在INO80染色质重塑复合物的功能中发挥着不可或缺的作用。