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模拟植物生物钟的光周期诱导

Modeling the photoperiodic entrainment of the plant circadian clock.

作者信息

De Caluwé Joëlle, de Melo José Romário Fernandes, Tosenberger Alen, Hermans Christian, Verbruggen Nathalie, Leloup Jean-Christophe, Gonze Didier

机构信息

Unité de Chronobiologie Théorique, Faculté des Sciences, CP 231, Université Libre de Bruxelles, Bvd du Triomphe, 1050 Brussels, Belgium.

Laboratory of Plant Physiology and Molecular Genetics, Interfaculty School of Bioengineers, CP 242, Université Libre de Bruxelles, Bvd du Triomphe, 1050 Brussels, Belgium.

出版信息

J Theor Biol. 2017 May 7;420:220-231. doi: 10.1016/j.jtbi.2017.03.005. Epub 2017 Mar 9.

Abstract

The circadian clock is an endogenous 24 hour rhythm that helps organisms anticipate and adapt to daily and seasonal variations in environment, such as the day/night cycle or changing temperatures. The plant clock is a complex network of transcription factors that regulate each other, forming interlocked feedback loops. Most of its components are light-regulated in some way, making the system highly sensitive to changes in light conditions. Here, we explore the mechanisms by which the plant clock adapts to changing day length. We first present some experimental data illustrating the variety of behaviors found in seedlings exposed to external day/night cycles different from 24h. We then use a mathematical model to characterize the response of the clock to a wide range of external cycle lengths and photoperiods. We show the existence of several domains of periodic entrainment with different ratios between the external cycle length and the period of the clock, and the presence of quasiperiodic and chaotic behaviors outside of the entrainment range. We simulate knockout mutants with impaired clock function and theoretical variants with diminished light sensitivity to highlight the role of a complex network and multiple light inputs in keeping the clock entrained over a wide range of conditions.

摘要

生物钟是一种内源性的24小时节律,它帮助生物体预测并适应环境中的每日和季节性变化,如昼夜循环或温度变化。植物生物钟是一个由相互调节的转录因子构成的复杂网络,形成了相互连锁的反馈环。其大多数组成部分都以某种方式受到光的调节,使得该系统对光照条件的变化高度敏感。在此,我们探究植物生物钟适应昼夜长度变化的机制。我们首先展示一些实验数据,这些数据说明了暴露于不同于24小时的外部昼夜循环的幼苗中发现的各种行为。然后,我们使用一个数学模型来描述生物钟对广泛的外部循环长度和光周期的响应。我们展示了存在几个周期性同步的区域,其中外部循环长度与生物钟周期之间具有不同的比率,并且在同步范围之外存在准周期和混沌行为。我们模拟了生物钟功能受损的基因敲除突变体以及光敏感性降低的理论变体,以突出复杂网络和多个光输入在使生物钟在广泛条件下保持同步方面的作用。

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