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[人类遗传学诊断:表型与基因组数据的整合]

[Diagnostics in human genetics : Integration of phenotypic and genomic data].

作者信息

Köhler Sebastian, Robinson Peter N

机构信息

NeuroCure Cluster of Excellence, Charité-Universitätsmedizin Berlin, Charitéplatz 1, 10117, Berlin, Deutschland.

The Jackson Laboratory for Genomic Medicine, 10 Discovery Drive, 06032, Farmington, USA.

出版信息

Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz. 2017 May;60(5):542-549. doi: 10.1007/s00103-017-2538-5.

Abstract

The development of reliable methods for annotation of clinical phenotypes and algorithms to calculate similarity values for clinical phenotype profiles will be a major challenge for genomic personalized medicine, since combined analysis of phenotypic features and genetic variants can increase diagnostic yield, especially with exome or genome sequencing. The Human Phenotype Ontology project (HPO; www.human-phenotype-ontology.org ) provides an ontology for capturing phenotypic abnormalities in human disease in a precise and comprehensive fashion. The HPO not only enables reliable integration of disease-relevant information from numerous databases, but it also allows for similarity between patients or between patients and disease descriptions to be calculated algorithmically. The HPO thereby represents a solid foundation for differential diagnostic applications as well as for translational research and prioritization of novel disease genes in exome or genome sequencing projects.

摘要

开发用于临床表型注释的可靠方法以及计算临床表型谱相似性值的算法,将是基因组个性化医疗面临的一项重大挑战,因为对表型特征和基因变异进行联合分析可以提高诊断率,尤其是在进行外显子组或基因组测序时。人类表型本体项目(HPO;www.human-phenotype-ontology.org )提供了一种本体,用于精确且全面地捕捉人类疾病中的表型异常。HPO不仅能够可靠整合来自众多数据库的疾病相关信息,还能通过算法计算患者之间或患者与疾病描述之间的相似性。因此,HPO为鉴别诊断应用、转化研究以及外显子组或基因组测序项目中新型疾病基因的优先级排序奠定了坚实基础。

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