Department of Physics & Astronomy, University of North Carolina Greensboro, Greensboro, North Carolina, USA.
Department of Theoretical Physics, Lebedev Physical Institute, Moscow, Russia.
Phys Rev E. 2017 Feb;95(2-1):022408. doi: 10.1103/PhysRevE.95.022408. Epub 2017 Feb 17.
Genetic oscillators play important roles in cell life regulation. The regulatory efficiency usually depends strongly on the emergence of stable collective dynamic modes, which requires designing the interactions between genetic networks. We investigate the dynamics of two identical synthetic genetic repressilators coupled by an additional plasmid which implements quorum sensing (QS) in each network thereby supporting global coupling. In a basic genetic ring oscillator network in which three genes inhibit each other in unidirectional manner, QS stimulates the transcriptional activity of chosen genes providing for competition between inhibitory and stimulatory activities localized in those genes. The "promoter strength", the Hill cooperativity coefficient of transcription repression, and the coupling strength, i.e., parameters controlling the basic rates of genetic reactions, were chosen for extensive bifurcation analysis. The results are presented as a map of dynamic regimes. We found that the remarkable multistability of the antiphase limit cycle and stable homogeneous and inhomogeneous steady states exists over broad ranges of control parameters. We studied the antiphase limit cycle stability and the evolution of irregular oscillatory regimes in the parameter areas where the antiphase cycle loses stability. In these regions we observed developing complex oscillations, collective chaos, and multistability between regular limit cycles and complex oscillations over uncommonly large intervals of coupling strength. QS coupling stimulates the appearance of intrachaotic periodic windows with spatially symmetric and asymmetric partial limit cycles which, in turn, change the type of chaos from a simple antiphase character into chaos composed of pieces of the trajectories having alternating polarity. The very rich dynamics discovered in the system of two identical simple ring oscillators may serve as a possible background for biological phenotypic diversification, as well as a stimulator to search for similar coupling in oscillator arrays in other areas of nature, e.g., in neurobiology, ecology, climatology, etc.
遗传振荡器在细胞生命调节中起着重要作用。调节效率通常强烈依赖于稳定的集体动态模式的出现,这需要设计遗传网络之间的相互作用。我们研究了两个相同的合成遗传阻遏子通过附加质粒耦合的动力学,该质粒在每个网络中实现群体感应(QS),从而支持全局耦合。在一个基本的遗传环形振荡器网络中,三个基因以单向方式相互抑制,QS 刺激所选基因的转录活性,为抑制和刺激活性在这些基因中的局部竞争提供支持。“启动子强度”,转录抑制的 Hill 协同系数,以及耦合强度,即控制遗传反应基本速率的参数,被选择用于广泛的分岔分析。结果以动态状态图的形式呈现。我们发现,反相极限环的显著多稳定性以及稳定的均匀和非均匀稳态存在于广泛的控制参数范围内。我们研究了反相极限环的稳定性和在反相周期失去稳定性的参数区域中不规则振荡状态的演化。在这些区域中,我们观察到发展中的复杂振荡、集体混沌以及规则极限周期和复杂振荡之间的多稳定性,这在耦合强度的不常见大区间中。QS 耦合刺激了具有空间对称和非对称部分极限周期的内混沌周期性窗口的出现,这反过来又将混沌的类型从简单的反相特征改变为具有交替极性的轨迹片段组成的混沌。在两个相同的简单环形振荡器系统中发现的丰富动力学可能作为生物表型多样化的可能背景,以及在其他自然领域(例如神经生物学、生态学、气候学等)的振荡器阵列中寻找类似耦合的刺激。