Department of Physics and Astronomy, University of North Carolina Greensboro, Greensboro, North Carolina 27402, USA.
Department of Theoretical Physics, Lebedev Physical Institute, Leninsky 53, Moscow 119991, Russia.
Chaos. 2020 Dec;30(12):121101. doi: 10.1063/5.0029959.
The simplest ring oscillator is made from three strongly nonlinear elements repressing each other unidirectionally, resulting in the emergence of a limit cycle. A popular implementation of this scheme uses repressor genes in bacteria, creating the synthetic genetic oscillator known as the Repressilator. We consider the main collective modes produced when two identical Repressilators are mean-field-coupled via the quorum-sensing mechanism. In-phase and anti-phase oscillations of the coupled oscillators emerge from two Andronov-Hopf bifurcations of the homogeneous steady state. Using the rate of the repressor's production and the value of coupling strength as the bifurcation parameters, we performed one-parameter continuations of limit cycles and two-parameter continuations of their bifurcations to show how bifurcations of the in-phase and anti-phase oscillations influence the dynamical behaviors for this system. Pitchfork bifurcation of the unstable in-phase cycle leads to the creation of novel inhomogeneous limit cycles with very different amplitudes, in contrast to the well-known asymmetrical limit cycles arising from oscillation death. The Neimark-Sacker bifurcation of the anti-phase cycle determines the border of an island in two-parameter space containing almost all the interesting regimes including the set of resonant limit cycles, the area with stable inhomogeneous cycle, and very large areas with chaotic regimes resulting from torus destruction and period doubling of resonant cycles and inhomogeneous cycles. We discuss the structure of the chaos skeleton to show the role of inhomogeneous cycles in its formation. Many regions of multistability and transitions between regimes are presented. These results provide new insights into the coupling-dependent mechanisms of multistability and collective regime symmetry breaking in populations of identical multidimensional oscillators.
最简单的环形振荡器由三个相互抑制的强非线性元件组成,从而产生一个极限环。这种方案的一种流行实现方法是使用细菌中的阻遏基因,创建一种称为 Repressilator 的合成遗传振荡器。我们考虑了通过群体感应机制对两个相同的 Repressilator 进行平均场耦合时产生的主要集体模式。当两个耦合振荡器出现同相和反相振荡时,从均匀稳定状态的两个 Andronov-Hopf 分岔中产生。使用阻遏物产生的速率和耦合强度的值作为分岔参数,我们对极限环进行了单参数延续,对它们分岔的双参数延续,以展示同相和反相振荡的分岔如何影响系统的动力学行为。不稳定同相周期的叉形分岔导致具有非常不同幅度的新型非均匀极限环的产生,这与由振荡死亡引起的众所周知的不对称极限环形成鲜明对比。反相周期的 Neimark-Sacker 分岔决定了含有几乎所有有趣的区域的双参数空间中的岛屿边界,包括共振极限环的集合、稳定非均匀环的区域以及由于环面破坏和共振环和非均匀环的倍周期而导致的混沌区域。我们讨论了混沌骨架的结构,以展示非均匀环在其形成中的作用。提出了许多多稳定性区域和状态之间的转变。这些结果为相同多维振荡器群体中依赖于耦合的多稳定性和集体状态对称性破坏的机制提供了新的见解。