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带有丝间开关过程的开放式纤维上的驱动输运。

Driven transport on open filaments with interfilament switching processes.

机构信息

Institute of Physics, Sachivalaya Marg, Bhubaneswar 751005, India.

Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400085, India.

出版信息

Phys Rev E. 2017 Feb;95(2-1):022417. doi: 10.1103/PhysRevE.95.022417. Epub 2017 Feb 28.

Abstract

We study a two-filament driven lattice gas model with oppositely directed species of particles moving on two parallel filaments with filament-switching processes and particle inflow and outflow at filament ends. The filament-switching process is correlated with the occupation number of the adjacent site such that particles switch filaments with finite probability only when oppositely directed particles meet on the same filament. This model mimics some of the coarse-grained features observed in context of microtubule-(MT) based intracellular transport, wherein cellular cargo loaded and off-loaded at filament ends are transported on multiple parallel MT filaments and can switch between the parallel microtubule filaments. We focus on a regime where the filaments are weakly coupled, such that filament-switching rate of particles scale inversely as the length of the filament. We find that the interplay of (off-) loading processes at the boundaries and the filament-switching process of particles leads to some distinctive features of the system. These features includes occurrence of a variety of phases in the system with inhomogeneous density profiles including localized density shocks, density difference across the filaments, and bidirectional current flows in the system. We analyze the system by developing a mean field (MF) theory and comparing the results obtained from the MF theory with the Monte Carlo (MC) simulations of the dynamics of the system. We find that the steady-state density and current profiles of particles and the phase diagram obtained within the MF picture matches quite well with MC simulation results. These findings maybe useful for studying multifilament intracellular transport.

摘要

我们研究了一种双丝驱动的格子气模型,其中两种相反方向的粒子在两条平行丝上运动,并带有丝切换过程和丝末端的粒子流入和流出。丝切换过程与相邻位点的占据数相关联,只有当相反方向的粒子在同一丝上相遇时,粒子才以有限的概率切换丝。该模型模拟了微管(MT)基细胞内运输中观察到的一些粗粒化特征,其中在丝末端加载和卸载的细胞货物在多个平行 MT 丝上运输,并且可以在平行微管丝之间切换。我们关注的是丝弱耦合的情况,即粒子的丝切换速率与丝的长度成反比。我们发现,边界处的(卸载)加载过程和粒子的丝切换过程之间的相互作用导致了系统的一些独特特征。这些特征包括系统中出现各种具有不均匀密度分布的相,包括局部密度冲击、丝之间的密度差以及系统中的双向电流流动。我们通过开发平均场(MF)理论来分析系统,并将从 MF 理论获得的结果与系统动力学的蒙特卡罗(MC)模拟进行比较。我们发现,MF 图像中的粒子稳态密度和电流分布以及相图与 MC 模拟结果非常吻合。这些发现可能有助于研究多丝细胞内运输。

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