Bioorganic Chemistry Laboratory, Council of Scientific and Industrial Research (CSIR)-Central Leather Research Institute, Adyar, Chennai, 600020, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-CLRI Campus, Chennai, 600020, India.
Bioorganic Chemistry Laboratory, Council of Scientific and Industrial Research (CSIR)-Central Leather Research Institute, Adyar, Chennai, 600020, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-CLRI Campus, Chennai, 600020, India.
Int J Biol Macromol. 2017 Aug;101:290-298. doi: 10.1016/j.ijbiomac.2017.03.070. Epub 2017 Mar 18.
Number of incurable diseases associated with neurodegenerative syndromes like Alzheimer's, and Parkinson's, are owing to protein aggregation which leads to amyloid fibril formation. In vitro, such fibrillation depends on concentration, temperature, pH, ionic strength, organic solvents, agitation, and stirring, which play a crucial role in understanding the mechanism of fibrillation as well as to identify potential inhibitors for fibrillation. Although these parameters were considered, the precise repeatability of amyloid fibrillation kinetics between laboratories remains challenging. Herein, we have demonstrated that another important parameter such as diameter of the vial in which protein undergoes fibrillation play a key role in the amyloid fibrillation. The various biophysical analyses indicated that the lag time, elongation, and the amount of fibril formation was significantly reduced with decreasing the diameter of the reaction vial from 24 to 15mm. Further, the minimum amount of protein required for fibrillation was determined by the diameter of the vial. The observed fibrillation difference in different vials is most likely due to the variation in the interface area between hydrophobic (air) and hydrophilic (water) surfaces as the diameter of the vial changes. The current results have a major role in the design of drug screening assays for amyloid inhibition.
与神经退行性综合征(如阿尔茨海默病和帕金森病)相关的不可治愈疾病的数量归因于蛋白质聚集,这导致了淀粉样纤维的形成。在体外,这种纤维形成取决于浓度、温度、pH 值、离子强度、有机溶剂、搅拌和搅动,这些因素在理解纤维形成机制以及鉴定潜在的纤维抑制剂方面起着至关重要的作用。尽管考虑了这些参数,但在实验室之间精确重复淀粉样纤维形成动力学仍然具有挑战性。在此,我们证明了另一个重要参数,如蛋白发生纤维形成的小瓶直径,在淀粉样纤维形成中起着关键作用。各种生物物理分析表明,随着反应小瓶直径从 24 毫米减小到 15 毫米,滞后时间、延伸和纤维形成量显著减少。此外,通过小瓶的直径确定了纤维形成所需的最小蛋白量。不同小瓶中观察到的纤维形成差异很可能是由于小瓶直径变化导致疏水性(空气)和亲水性(水)表面之间的界面面积发生变化所致。目前的结果在设计用于淀粉样蛋白抑制的药物筛选测定中具有重要作用。