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基于景观基因组学对铁杉在全新世气候变化响应下历史迁移的见解。

Landscape genomic insights into the historic migration of mountain hemlock in response to Holocene climate change.

作者信息

Johnson Jeremy S, Gaddis Keith D, Cairns David M, Konganti Kranti, Krutovsky Konstantin V

机构信息

Department of Geography, Texas A&M University, 810 Eller O&M Building, MS 3147 TAMU, College Station, Texas 77843-3147 USA

Department of Geography, Texas A&M University, 810 Eller O&M Building, MS 3147 TAMU, College Station, Texas 77843-3147 USA.

出版信息

Am J Bot. 2017 Mar;104(3):439-450. doi: 10.3732/ajb.1600262. Epub 2017 Mar 21.

Abstract

PREMISE OF THE STUDY

Untangling alternative historic dispersal pathways in long-lived tree species is critical to better understand how temperate tree species may respond to climatic change. However, disentangling these alternative pathways is often difficult. Emerging genomic technologies and landscape genetics techniques improve our ability to assess these pathways in natural systems. We address the question to what degree have microrefugial patches and long-distance dispersal been responsible for the colonization of mountain hemlock () on the Alaskan Kenai Peninsula.

METHODS

We used double-digest restriction-associated DNA sequencing (ddRADseq) to identify genetic variants across eight mountain hemlock sample sites on the Kenai Peninsula, Alaska. We assessed genetic diversity and linkage disequilibrium using landscape and population genetics approaches. Alternative historic dispersal pathways were assessed using discriminant analysis of principle components and electrical circuit theory.

KEY RESULTS

A combination of decreasing diversity, high gene flow, and landscape connectivity indicates that mountain hemlock colonization on the Kenai Peninsula is the result of long-distance dispersal. We found that contemporary climate best explained gene flow patterns and that isolation by resistance was a better model explaining genetic variation than isolation by distance.

CONCLUSIONS

Our findings support the conclusion that mountain hemlock colonization is the result of several long-distance dispersal events following Pleistocene glaciation. The high dispersal capability suggests that mountain hemlock may be able to respond to future climate change and expand its range as new habitat opens along its northern distribution.

摘要

研究前提

理清长寿树种的其他历史扩散路径对于更好地理解温带树种如何应对气候变化至关重要。然而,理清这些不同的路径往往很困难。新兴的基因组技术和景观遗传学技术提高了我们在自然系统中评估这些路径的能力。我们探讨了微避难所斑块和长距离扩散在多大程度上促成了阿拉斯加基奈半岛铁杉()的定殖。

方法

我们使用双酶切限制性内切酶相关DNA测序(ddRADseq)来识别阿拉斯加基奈半岛八个铁杉样本地点的遗传变异。我们使用景观和种群遗传学方法评估遗传多样性和连锁不平衡。使用主成分判别分析和电路理论评估其他历史扩散路径。

主要结果

多样性降低、基因流高和景观连通性的综合结果表明,基奈半岛铁杉的定殖是长距离扩散的结果。我们发现当代气候最能解释基因流模式,并且抗性隔离比距离隔离更能解释遗传变异。

结论

我们的研究结果支持以下结论,即铁杉的定殖是更新世冰川作用后几次长距离扩散事件的结果。高扩散能力表明,随着其北半部分布沿线新栖息地的出现,铁杉可能能够应对未来的气候变化并扩大其分布范围。

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