FRAGMAP——一个用于限制酶切位点图谱比较的程序。
FRAGMAP--a program for restriction site map comparison.
作者信息
Gershon P D, Knowles N J
机构信息
AFRC Institute for Animal Health, Woking, Surrey, UK.
出版信息
Nucleic Acids Res. 1988 Mar 11;16(5):1779-87. doi: 10.1093/nar/16.5.1779.
Abstract
A program is described which aligns pairs of linear restriction site maps using an algorithm which maximizes the number of coincident sites through the addition of extra 'padding' fragments; and makes maps of the non-conserved sites between pairs and triplets of input maps. A range of display facilities, hardcopy functions and database management routines are also included. The program runs on a stand-alone microcomputer, and is stored along with a database of several hundred files on a single floppy disc.
摘要
本文描述了一个程序，该程序使用一种算法来比对线性限制酶切位点图谱对，该算法通过添加额外的“填充”片段来最大化重合位点的数量；并绘制输入图谱对和三联体之间非保守位点的图谱。还包括一系列显示工具、硬拷贝功能和数据库管理程序。该程序在独立的微型计算机上运行，并与数百个文件的数据库一起存储在一张软盘上。
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本文引用的文献
1
An efficient program to construct restriction maps from experimental data with realistic error levels.一个用于从具有实际误差水平的实验数据构建限制图谱的高效程序。
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):703-16. doi: 10.1093/nar/12.1part2.703.
2
PLASMAP: an interactive computational tool for storage, retrieval and device-independent graphic display of conventional restriction maps.PLASMAP：一种用于传统限制性图谱的存储、检索及与设备无关的图形显示的交互式计算工具。
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):465-71. doi: 10.1093/nar/12.1part2.465.
3
Algorithms for restriction map comparisons.限制酶切图谱比较算法。
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):237-42. doi: 10.1093/nar/12.1part1.237.
4
Automatic construction of restriction site maps.限制酶切位点图谱的自动构建。
Nucleic Acids Res. 1982 Jan 11;10(1):217-27. doi: 10.1093/nar/10.1.217.
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A simple computer program for calculating, modifying and drawing circular restriction maps.一个用于计算、修改和绘制圆形限制性图谱的简单计算机程序。
Nucleic Acids Res. 1982 Jan 11;10(1):19-26. doi: 10.1093/nar/10.1.19.
6
A program package applicable to the detection of overlaps between restriction maps.一个适用于检测限制酶切图谱之间重叠区域的程序包。
Nucleic Acids Res. 1986 Jan 10;14(1):351-62. doi: 10.1093/nar/14.1.351.
7
A computer program package for restriction map analysis and manipulation.用于限制性图谱分析与操作的计算机程序包。
Nucleic Acids Res. 1986 Jan 10;14(1):335-49. doi: 10.1093/nar/14.1.335.
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