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从黄麻(C. olitorius L.)活跃发育的韧皮纤维中富含黏液、酚类和次生代谢物的树皮组织中提取RNA的一种高效且经济有效的方法。

An efficient and cost effective method of RNA extraction from mucilage, phenol and secondary metabolite rich bark tissue of tossa jute (C. olitorius L.) actively developing phloem fiber.

作者信息

Choudhary S B, Kumar M, Chowdhury I, Singh R K, Pandey S P, Sharma H K, Karmakar P G

机构信息

Central Research Institute for Jute and Allied Fibres, Barrackpore, Kolkata, WB, India.

Indian Institute of Science Education and Research, Kolkata, WB, India.

出版信息

3 Biotech. 2016 Jun;6(1):100. doi: 10.1007/s13205-016-0415-9. Epub 2016 Apr 12.

Abstract

Tossa jute is an important natural fiber crop of Southeast Asian countries including India, Bangladesh, China, Thailand, Myanmar etc. Traditional industrial application of jute fiber is limited to the packaging products like hessians, sacks, etc. and the fiber found unsuitable for textile industries largely due to significantly high lignin content. Therefore, understanding genetic factors underlying lignin biosynthesis in tossa jute holds promise for jute based product diversification. The major limiting factor in undertaking such study is unavailability of efficient protocol for RNA extraction at secondary growth active stage of tossa jute. Here we report a simplified, swift and cost effective protocol for isolating fairly good quality RNA from bark tissue of 65-days-old field grown tossa jute plant with active secondary growth. The purity, concentration and integrity of extracted RNA ascertained. To confirm downstream amenability, isolated RNA samples were reverse transcribed and PCR analysis done by using CCoAMT1 primer. Results established that method of RNA extraction presented here is an improvement over the other methods, particularly for bark tissue of field grown tossa jute at advance developmental stage. Therefore, present study will enhance our ability to understand expression pattern of fiber formation and maturation related genes in mature bark tissue that holds key for much talked genetic manipulation of fiber quality via lignin optimisation in the crop.

摘要

黄麻是印度、孟加拉国、中国、泰国、缅甸等东南亚国家重要的天然纤维作物。黄麻纤维的传统工业应用仅限于包装产品,如粗麻布、麻袋等,并且由于木质素含量显著较高,该纤维在很大程度上被认为不适合纺织工业。因此,了解黄麻中木质素生物合成的遗传因素有望实现基于黄麻的产品多样化。进行此类研究的主要限制因素是在黄麻次生生长活跃阶段缺乏有效的RNA提取方案。在此,我们报告了一种简化、快速且经济高效的方案,用于从具有活跃次生生长的65日龄田间种植的黄麻植株的树皮组织中分离出质量相当好的RNA。确定了提取RNA的纯度、浓度和完整性。为了确认下游适用性,对分离的RNA样本进行逆转录,并使用CCoAMT1引物进行PCR分析。结果表明,本文提出的RNA提取方法相较于其他方法有所改进,特别是对于处于发育后期的田间种植黄麻的树皮组织。因此,本研究将增强我们了解成熟树皮组织中纤维形成和成熟相关基因表达模式的能力,而这对于通过优化作物中的木质素来进行备受关注的纤维品质基因操作至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/14c6/4829573/6463e09d871c/13205_2016_415_Fig1_HTML.jpg

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