Trimmer Elizabeth E, Wanninayake Udayanga S, Fitzpatrick Paul F
Department of Chemistry, Grinnell College , Grinnell, Iowa 50112, United States.
Department of Biochemistry and Structural Biology, University of Texas Health Science Center , San Antonio, Texas 78229, United States.
Biochemistry. 2017 Apr 11;56(14):2024-2030. doi: 10.1021/acs.biochem.7b00161. Epub 2017 Apr 3.
The flavoprotein d-amino acid oxidase has long served as a paradigm for understanding the mechanism of oxidation of amino acids by flavoproteins. Recently, a mutant d-amino acid oxidase (Y228L/R283G) that catalyzed the oxidation of amines rather than amino acids was described [Yasukawa, K., et al. (2014) Angew. Chem., Int. Ed. 53, 4428-4431]. We describe here the use of pH and kinetic isotope effects with (R)-α-methylbenzylamine as a substrate to determine whether the mutant enzyme utilizes the same catalytic mechanism as the wild-type enzyme. The effects of pH on the steady-state and rapid-reaction kinetics establish that the neutral amine is the substrate, while an active-site residue, likely Tyr224, must be uncharged for productive binding. There is no solvent isotope effect on the k/K value for the amine, consistent with the neutral amine being the substrate. The deuterium isotope effect on the k/K value is pH-independent, with an average value of 5.3, similar to values found with amino acids as substrates for the wild-type enzyme and establishing that there is no commitment to catalysis with this substrate. The k/K value is similar to that seen with amino acids as the substrate, consistent with the oxidative half-reaction being unperturbed by the mutation and with flavin oxidation preceding product release. All of the data are consistent with the mutant enzyme utilizing the same mechanism as the wild-type enzyme, transfer of hydride from the neutral amine to the flavin.
黄素蛋白 D-氨基酸氧化酶长期以来一直是理解黄素蛋白氧化氨基酸机制的范例。最近,有人描述了一种催化胺而非氨基酸氧化的突变型 D-氨基酸氧化酶(Y228L/R283G)[安川,K.等人(2014年)《德国应用化学》,国际版53卷,4428 - 4431页]。我们在此描述使用pH值和动力学同位素效应,以(R)-α-甲基苄胺作为底物,来确定突变酶是否采用与野生型酶相同的催化机制。pH值对稳态和快速反应动力学的影响表明,中性胺是底物,而一个活性位点残基(可能是Tyr224)必须不带电荷才能进行有效结合。对于胺的k/K值没有溶剂同位素效应,这与中性胺是底物一致。氘同位素对k/K值的影响与pH值无关,平均值为5.3,类似于以氨基酸作为野生型酶底物时发现的值,这表明该底物没有催化倾向性。k/K值与以氨基酸作为底物时观察到的相似,这与氧化半反应不受突变干扰且黄素氧化先于产物释放一致。所有数据都与突变酶采用与野生型酶相同的机制一致,即氢化物从中性胺转移到黄素上。