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旧貌换新颜:基因组测序的混合分离分析时代的酵母突变体筛选。

What's old is new again: yeast mutant screens in the era of pooled segregant analysis by genome sequencing.

作者信息

Curtin Chris, Cordente Toni

机构信息

The Australian Wine Research Institute, Urrbrae, SA 5064, Australia.

出版信息

Microb Cell. 2016 Apr 4;3(4):132-134. doi: 10.15698/mic2016.04.488.

Abstract

While once for identification of genes involved in biological processes, screening of chemically induced mutant populations is an approach that has largely been superseded for model organisms such as . Availability of single gene deletion/overexpression libraries and combinatorial synthetic genetic arrays provide yeast researchers more structured ways to probe genetic networks. Furthermore, in the age of inexpensive DNA sequencing, methodologies such as mapping of quantitative trait loci (QTL) by pooled segregant analysis and genome-wide association enable the identification of multiple naturally occurring allelic variants that contribute to polygenic phenotypes of interest. This is, however, contingent on the capacity to screen large numbers of individuals and existence of sufficient natural phenotypic variation within the available population. The latter cannot be guaranteed and non-selectable, industrially relevant phenotypes, such as production of volatile aroma compounds, pose severe limitations on the use of modern genetic techniques due to expensive and time-consuming downstream analyses. An interesting approach to overcome these issues can be found in Den Abt . 1 (this issue of ), where a combination of repeated rounds of chemical mutagenesis and pooled segregant analysis by whole genome sequencing was applied to identify genes involved in ethyl acetate formation, demonstrating a new path for industrial yeast strain development and bringing classical mutant screens into the 21 century.

摘要

虽然曾经通过筛选化学诱导的突变群体来鉴定参与生物过程的基因是一种方法,但对于诸如[具体模型生物]等模式生物而言,这种方法在很大程度上已被取代。单基因缺失/过表达文库和组合合成遗传阵列的出现,为酵母研究人员提供了更具系统性的方式来探究遗传网络。此外,在DNA测序成本低廉的时代,诸如通过混合分离分析和全基因组关联来定位数量性状基因座(QTL)等方法,能够鉴定出多个导致感兴趣的多基因表型的自然发生的等位基因变体。然而,这取决于筛选大量个体的能力以及可用群体中是否存在足够的自然表型变异。后者无法得到保证,而且诸如挥发性香气化合物的产生等不可选择的、与工业相关的表型,由于下游分析成本高昂且耗时,对现代遗传技术的应用构成了严重限制。在本期《[期刊名称]》第1期Den Abt等人的文章中可以找到一种克服这些问题的有趣方法,其中通过重复多轮化学诱变和全基因组测序的混合分离分析相结合,来鉴定参与乙酸乙酯形成的基因,为工业酵母菌株的开发开辟了一条新途径,并将经典的突变筛选带入了21世纪。

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