基于动力学的蛋白质二硫键异构酶活性位点的插入序列变体捕获鉴定血小板蛋白质底物。

Kinetic-based trapping by intervening sequence variants of the active sites of protein-disulfide isomerase identifies platelet protein substrates.

作者信息

Stopa Jack D, Baker Katherine M, Grover Steven P, Flaumenhaft Robert, Furie Bruce

机构信息

From the Division of Hemostasis and Thrombosis, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts 02215.

From the Division of Hemostasis and Thrombosis, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts 02215

出版信息

J Biol Chem. 2017 Jun 2;292(22):9063-9074. doi: 10.1074/jbc.M116.771832. Epub 2017 Mar 31.

Abstract

Thiol isomerases such as protein-disulfide isomerase (PDI) direct disulfide rearrangements required for proper folding of nascent proteins synthesized in the endoplasmic reticulum. Identifying PDI substrates is challenging because PDI catalyzes conformational changes that cannot be easily monitored ( compared with proteolytic cleavage or amino acid phosphorylation); PDI has multiple substrates; and it can catalyze either oxidation, reduction, or isomerization of substrates. Kinetic-based substrate trapping wherein the active site motif CGHC is modified to CGHA to stabilize a PDI-substrate intermediate is effective in identifying some substrates. A limitation of this approach, however, is that it captures only substrates that are reduced by PDI, whereas many substrates are oxidized by PDI. By manipulating the highly conserved -GH- residues in the CGHC active site of PDI, we created PDI variants with a slowed reaction rate toward substrates. The prolonged intermediate state allowed us to identify protein substrates that have biased affinities for either oxidation or reduction by PDI. Because extracellular PDI is critical for thrombus formation but its extracellular substrates are not known, we evaluated the ability of these bidirectional trapping PDI variants to trap proteins released from platelets and on the platelet surface. Trapped proteins were identified by mass spectroscopy. Of the trapped substrate proteins identified by mass spectroscopy, five proteins, cathepsin G, glutaredoxin-1, thioredoxin, GP1b, and fibrinogen, showed a bias for oxidation, whereas annexin V, heparanase, ERp57, kallekrein-14, serpin B6, tetranectin, and collagen VI showed a bias for reduction. These bidirectional trapping variants will enable more comprehensive identification of thiol isomerase substrates and better elucidation of their cellular functions.

摘要

硫醇异构酶,如蛋白质二硫键异构酶(PDI),指导内质网中新生蛋白质正确折叠所需的二硫键重排。鉴定PDI底物具有挑战性,因为PDI催化的构象变化难以轻易监测(与蛋白水解切割或氨基酸磷酸化相比);PDI有多种底物;并且它可以催化底物的氧化、还原或异构化。基于动力学的底物捕获方法,即将活性位点基序CGHC修饰为CGHA以稳定PDI-底物中间体,在鉴定一些底物方面是有效的。然而,这种方法的一个局限性是它只捕获被PDI还原的底物,而许多底物是被PDI氧化的。通过操纵PDI的CGHC活性位点中高度保守的-GH-残基,我们创建了对底物反应速率减慢的PDI变体。延长的中间状态使我们能够鉴定对PDI氧化或还原具有偏向亲和力的蛋白质底物。由于细胞外PDI对血栓形成至关重要,但其细胞外底物尚不清楚,我们评估了这些双向捕获PDI变体捕获从血小板释放的和血小板表面的蛋白质的能力。通过质谱鉴定捕获的蛋白质。在通过质谱鉴定的捕获底物蛋白中,组织蛋白酶G、谷氧还蛋白-1、硫氧还蛋白、糖蛋白1b和纤维蛋白原这五种蛋白表现出氧化偏向,而膜联蛋白V、乙酰肝素酶、内质网蛋白57、激肽释放酶-14、丝氨酸蛋白酶抑制剂B6、四连蛋白和胶原蛋白VI表现出还原偏向。这些双向捕获变体将能够更全面地鉴定硫醇异构酶底物,并更好地阐明它们的细胞功能。

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