Karl Matthias, Spoerner Michael, Pham Thuy-Vy, Narayanan Sunilkumar Puthenpurackal, Kremer Werner, Kalbitzer Hans Robert
University of Regensburg, Institute of Biophysics and Physical Biochemistry, Centre of Magnetic Resonance in Chemistry and Biomedicine, Universitätsstraße 31, 93053 Regensburg, Germany.
University of Regensburg, Institute of Biophysics and Physical Biochemistry, Centre of Magnetic Resonance in Chemistry and Biomedicine, Universitätsstraße 31, 93053 Regensburg, Germany.
Biophys Chem. 2017 Dec;231:50-54. doi: 10.1016/j.bpc.2017.03.008. Epub 2017 Mar 30.
High pressure NMR spectroscopy is a powerful method for identifying rare conformational states of proteins from the pressure response of their chemical shifts. Many proteins have bound adenine nucleotides at their active centers, in most cases in a complex with Mg-ions. The P NMR signals of phosphate groups of the nucleotides can be used as probes for conformational transitions in the proteins themselves. For distinguishing protein specific pressure effects from trivial pressure responses not due to the protein interaction, data of the pressure response of the free nucleotides must be available. Therefore, the pressure response of P chemical shifts of the adenine nucleotides AMP, ADP, and ATP and their Mg-complexes has been determined at pH values several units distant from the respective pK-values. It is clearly non-linear for most of the resonances. A negative first order pressure coefficient B was determined for all P resonances except Mg·AMP indicating an upfield shift of the resonances with pressure. The smallest and largest negative values are obtained for the α-phosphate group of ADP and β-phosphate group of Mg·ATP with -0.32 and -4.59ppm/GPa, respectively. With exception of the α-phosphate group of Mg·AMP the second order pressure coefficients are positive leading to a saturation like behaviour. The pressure response of the adenine nucleotides is similar but not identical to that observed earlier for guanine nucleotides. The obtained data show that the chemical shift pressure response of the different phosphate groups is rather different dependent on the position of phosphate group in the nucleotide and the nucleotide used.
高压核磁共振光谱法是一种通过蛋白质化学位移的压力响应来识别其稀有构象状态的强大方法。许多蛋白质在其活性中心结合有腺嘌呤核苷酸,在大多数情况下是与镁离子形成复合物。核苷酸磷酸基团的磷核磁共振信号可作为蛋白质自身构象转变的探针。为了区分蛋白质特异性压力效应与非蛋白质相互作用引起的普通压力响应,必须获得游离核苷酸压力响应的数据。因此,已在远离各自pK值几个单位的pH值下测定了腺嘌呤核苷酸AMP、ADP和ATP及其镁复合物的磷化学位移的压力响应。对于大多数共振来说,它显然是非线性的。除Mg·AMP外,所有磷共振的一阶压力系数B均为负,表明共振随压力向上场移动。ADP的α-磷酸基团和Mg·ATP的β-磷酸基团分别获得最小和最大的负值,分别为-0.32和-4.59ppm/GPa。除Mg·AMP的α-磷酸基团外,二阶压力系数为正,导致类似饱和的行为。腺嘌呤核苷酸的压力响应与早期观察到的鸟嘌呤核苷酸的压力响应相似但不完全相同。获得的数据表明,不同磷酸基团的化学位移压力响应因核苷酸中磷酸基团的位置和所使用的核苷酸而异。