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通过靶向二代测序技术分析中国肢带型肌营养不良症患者的突变谱。

Mutational spectrum of Chinese LGMD patients by targeted next-generation sequencing.

作者信息

Yu Meng, Zheng Yiming, Jin Suqin, Gang Qiang, Wang Qingqing, Yu Peng, Lv He, Zhang Wei, Yuan Yun, Wang Zhaoxia

机构信息

Department of Neurology, Peking University First Hospital, Beijing, China.

Science and Technology, Precisionmdx Inc., Beijing, China.

出版信息

PLoS One. 2017 Apr 12;12(4):e0175343. doi: 10.1371/journal.pone.0175343. eCollection 2017.

DOI:10.1371/journal.pone.0175343
PMID:28403181
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5389788/
Abstract

This study aimed to study the diagnostic value of targeted next-generation sequencing (NGS) in limb-girdle muscular dystrophies (LGMDs), and investigate the mutational spectrum of Chinese LGMD patients. We performed targeted NGS covering 420 genes in 180 patients who were consecutively suspected of LGMDs and underwent muscle biopsies from January 2013 to May 2015. The association between genotype and myopathological profiles was analyzed in the genetically confirmed LGMD patients. With targeted NGS, one or more rare variants were detected in 138 patients, of whom 113 had causative mutations, 10 sporadic patients had one pathogenic heterozygous mutation related to a recessive pattern of LGMDs, and 15 had variants of uncertain significance. No disease-causing mutation was found in the remaining 42 patients. Combined with the myopathological findings, we achieved a positive genetic diagnostic rate as 68.3% (123/180). Totally 105 patients were diagnosed as LGMDs with genetic basis. Among these 105 patients, the most common subtypes were LGMD2B in 52 (49.5%), LGMD2A in 26 (24.8%) and LGMD 2D in eight (7.6%), followed by LGMD1B in seven (6.7%), LGMD1E in four (3.8%), LGMD2I in three (2.9%), and LGMD2E, 2F, 2H, 2K, 2L in one patient (1.0%), respectively. Although some characteristic pathological changes may suggest certain LGMD subtypes, both heterogeneous findings in a certain subtype and overlapping presentations among different subtypes were not uncommon. The application of NGS, together with thorough clinical and myopathological evaluation, can substantially improve the molecular diagnostic rate in LGMDs. Confirming the genetic diagnosis in LGMD patients can help improve our understanding of their myopathological changes.

摘要

本研究旨在探讨靶向二代测序(NGS)在肢带型肌营养不良症(LGMDs)中的诊断价值,并研究中国LGMD患者的突变谱。我们对2013年1月至2015年5月期间连续收治的180例疑似LGMDs且接受了肌肉活检的患者进行了覆盖420个基因的靶向NGS检测。对基因确诊的LGMD患者分析了基因型与肌病理特征之间的关联。通过靶向NGS,在138例患者中检测到一个或多个罕见变异,其中113例有致病突变,10例散发患者有一个与LGMDs隐性模式相关的致病杂合突变,15例有意义未明的变异。其余42例患者未发现致病突变。结合肌病理结果,我们的基因诊断阳性率为68.3%(123/180)。共有105例患者被诊断为有遗传基础的LGMDs。在这105例患者中,最常见的亚型是LGMD2B(52例,49.5%)、LGMD2A(26例,24.8%)和LGMD 2D(8例,7.6%),其次是LGMD1B(7例,6.7%)、LGMD1E(4例,3.8%)、LGMD2I(3例,2.9%),以及LGMD2E、2F、2H、2K和2L各1例(1.0%)。尽管一些特征性病理改变可能提示某些LGMD亚型,但某一亚型中的异质性表现以及不同亚型之间的重叠表现并不少见。NGS的应用,结合全面的临床和肌病理评估,可显著提高LGMDs的分子诊断率。确诊LGMD患者的基因诊断有助于增进我们对其肌病理改变的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3710/5389788/bc88af9aff2c/pone.0175343.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3710/5389788/809a1a2e8e29/pone.0175343.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3710/5389788/c3e1728011bf/pone.0175343.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3710/5389788/bc88af9aff2c/pone.0175343.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3710/5389788/809a1a2e8e29/pone.0175343.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3710/5389788/c3e1728011bf/pone.0175343.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3710/5389788/bc88af9aff2c/pone.0175343.g003.jpg

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