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QuickLib,一种通过简并寡核苷酸的无缝克隆构建完全合成质粒文库的方法。

QuickLib, a method for building fully synthetic plasmid libraries by seamless cloning of degenerate oligonucleotides.

作者信息

Galka Pierre, Jamez Elisabeth, Joachim Gilles, Soumillion Patrice

机构信息

Institut des Sciences de la Vie, Université catholique de Louvain, Louvain-la-Neuve, Belgium.

出版信息

PLoS One. 2017 Apr 13;12(4):e0175146. doi: 10.1371/journal.pone.0175146. eCollection 2017.

DOI:10.1371/journal.pone.0175146
PMID:28406948
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5390991/
Abstract

Incorporation of synthetic degenerate oligonucleotides into plasmids for building highly diverse genetic libraries requires efficient and quantitative DNA manipulation. We present a fast and seamless method for generating libraries of PCR-synthesized plasmids designed with a degenerate sequence and short overlapping ends. Our method called QuickLib should find many applications in synthetic biology; as an example, we easily prepared genetic libraries of Escherichia coli expressing billions of different backbone cyclic peptides.

摘要

将合成的简并寡核苷酸整合到质粒中以构建高度多样化的基因文库需要高效且定量的DNA操作。我们提出了一种快速且无缝的方法来生成由PCR合成的质粒文库,这些质粒设计有简并序列和短重叠末端。我们的方法称为QuickLib,在合成生物学中应有许多应用;例如,我们轻松制备了表达数十亿种不同骨架环肽的大肠杆菌基因文库。

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Multichange isothermal mutagenesis: a new strategy for multiple site-directed mutations in plasmid DNA.多重变化等温诱变:质粒DNA中多位点定向突变的新策略。
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Intein-mediated cyclization of randomized peptides in the periplasm of Escherichia coli and their extracellular secretion.在大肠杆菌周质腔中环化随机肽的内含肽介导作用及其细胞外分泌。
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Enzymatic assembly of DNA molecules up to several hundred kilobases.
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使用高通量方法实验性绘制分子适应性景观的采样策略。
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Combining CRISPR-Cas-mediated terminal resolution with a novel genetic workflow to achieve high-diversity adenoviral libraries.将CRISPR-Cas介导的末端切割与一种新型遗传工作流程相结合,以构建高多样性腺病毒文库。
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DNA polymerase-catalyzed addition of nontemplated extra nucleotides to the 3' end of a DNA fragment.DNA聚合酶催化将非模板额外核苷酸添加到DNA片段的3'末端。
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