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从马来西亚丁加奴州受烃污染土壤中分离出的产生物表面活性剂枯草芽孢杆菌UMX-103的基因组序列草图

Draft Genome Sequence of a Biosurfactant-Producing Bacillus subtilis UMX-103 Isolated from Hydrocarbon-Contaminated Soil in Terengganu, Malaysia.

作者信息

Abdelhafiz Yousri Abdelmutalab, Manaharan Thamilvaani, BinMohamad Saharuddin, Merican Amir Feisal

机构信息

Institute of Biological Sciences, Faculty of Science, University of Malaya, 50603, Kuala Lumpur, Malaysia.

Centre of Research for Computational Sciences & Informatics for Biology, Bioindustry, Environment, Agriculture and Healthcare (CRYSTAL), University of Malaya, 50603, Kuala Lumpur, Malaysia.

出版信息

Curr Microbiol. 2017 Jul;74(7):803-805. doi: 10.1007/s00284-017-1249-3. Epub 2017 Apr 17.

Abstract

The draft genome here presents the sequence of Bacillus subtilis UMX-103. The bacterial strain was isolated from hydrocarbon-contaminated soil from Terengganu, Malaysia. The whole genome of the bacterium was sequenced using Illumina HiSeq 2000 sequencing platform. The genome was assembled using de novo approach. The genome size of UMX-103 is 4,234,627 bp with 4399 genes comprising 4301 protein-coding genes and 98 RNA genes. The analysis of assembled genes revealed the presence of 25 genes involved in biosurfactant production, where 14 of the genes are related to biosynthesis and 11 of the genes are in the regulation of biosurfactant productions. This draft genome will provide insights into the genetic bases of its biosurfactant-producing capabilities.

摘要

这里的基因组草图展示了枯草芽孢杆菌UMX - 103的序列。该菌株是从马来西亚登嘉楼受烃污染的土壤中分离出来的。使用Illumina HiSeq 2000测序平台对该细菌的全基因组进行了测序。采用从头组装方法对基因组进行组装。UMX - 103的基因组大小为4,234,627 bp,有4399个基因,包括4301个蛋白质编码基因和98个RNA基因。对组装基因的分析表明,有25个基因参与生物表面活性剂的产生,其中14个基因与生物合成有关,11个基因参与生物表面活性剂产生的调控。这个基因组草图将为其生物表面活性剂生产能力的遗传基础提供见解。

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