Cho Chul-Woong, Park Jeong-Soo, Zhao Yufeng, Yun Yeoung-Sang
School of Chemical Engineering, Chonbuk National University, 567 Beakje-dearo, Deokjin-gu, Jeonju, Jeonbuk 561-756, Republic of Korea.
School of Chemical Engineering, Chonbuk National University, 567 Beakje-dearo, Deokjin-gu, Jeonju, Jeonbuk 561-756, Republic of Korea.
Environ Pollut. 2017 Aug;227:8-14. doi: 10.1016/j.envpol.2017.04.061. Epub 2017 Apr 25.
Since Escherichia coli is ubiquitous in nature and has been applied to biological, chemical, and environmental processes, molecular-level understanding of adsorptive interactions between chemicals and the bacterial surface is of great importance. To characterise the adsorption properties of the surface of E. coli cells in aquatic environment, the binding affinities (log K) of calibration compounds were experimentally measured, and then based on the values and numerically well-defined molecular interaction forces, i.e. linear free energy relationship (LFER) descriptors, a predictive model was developed. The examined substances are composed of cations, anions, and neutral compounds, and the used LFER descriptors are excess molar refraction (E), dipolarity/polarisability (S), H-bonding acidity (A) and basicity (B), McGowan volume (V), and coulombic interactions of cations (J) and anions (J). In experimental results, adsorption of anions on the bacterial surface was not observed, while cations exhibited high affinities. In case of neutral compounds, their low quantities were adsorbed, however whose affinities were mostly lower than those of cations. In a LFER study, it was shown that cationic interaction term has the best correlation in R of 0.691 and sequential additions of S, A, and V help to increase the prediction accuracy. The LFER model (log K = - 0.72-0.79 S + 0.81 A + 0.41 V + 0.85 J) could predict the log K in R of 0.871 and SE of 0.402 log unit, and then to check robustness and predictability of the model, we internally validated it by a leave-one-out cross validation (Q) study. As a result, the Q value was estimated to be 0.826, which was larger than standard of model acceptability (>0.5).
由于大肠杆菌在自然界中普遍存在,并且已应用于生物、化学和环境过程,因此从分子水平理解化学物质与细菌表面之间的吸附相互作用非常重要。为了表征水生环境中大肠杆菌细胞表面的吸附特性,通过实验测量了校准化合物的结合亲和力(log K),然后基于这些值和数值明确的分子相互作用力,即线性自由能关系(LFER)描述符,开发了一个预测模型。所研究的物质由阳离子、阴离子和中性化合物组成,所使用的LFER描述符包括过量摩尔折射度(E)、偶极矩/极化率(S)、氢键酸度(A)和碱度(B)、麦高恩体积(V)以及阳离子(J)和阴离子(J)的库仑相互作用。实验结果表明,未观察到阴离子在细菌表面的吸附,而阳离子表现出高亲和力。对于中性化合物,它们的吸附量较低,但其亲和力大多低于阳离子。在LFER研究中,结果表明阳离子相互作用项的相关性最佳(R为0.691),依次加入S、A和V有助于提高预测准确性。LFER模型(log K = - 0.72 - 0.79 S + 0.81 A + 0.41 V + 0.85 J)可以预测log K,R为0.871,标准误差为0.402 log单位,然后为了检验模型的稳健性和可预测性,我们通过留一法交叉验证(Q)研究对其进行了内部验证。结果,Q值估计为0.826,大于模型可接受标准(>0.5)。