Lee Shang-Chien, Hsiao Chung-Der, Wang Yung-Song, Lou Show-Wan
Institute of Fisheries Science, College of life science, National Taiwan University, Taipei 10617, Taiwan.
Department of Bioscience Technology, Chung Yuan Christian University, Chung-Li district, Taoyuan, city 32023, Taiwan.
Mar Genomics. 2017 Oct;35:31-34. doi: 10.1016/j.margen.2017.04.002. Epub 2017 May 4.
In this study we investigate the intra-ovarian pathways underlying early follicle development in Japanese eels, Anguilla japonica. We conducted high-throughput transcriptome analyses in the initial development of the ovary via the next-generation sequencing (NGS). Japanese eels were treated with three weekly salmon pituitary homogenate (SPH) injections. Using RNA-seq, we obtained 29,117,237 and 41,867,557 reads from the control and the SPH-injected groups, respectively. Combining these RNA-seq datasets, we acquired a total of 101,711 unigenes (N50=1,517bp) after performing de novo assembly. After differentially expressed gene (DEG) analysis, 4,211 and 7,059 annotated genes showed upregulation and downregulation respectively in SPH-injected ovarian tissues. Furthermore, functions of annotated genes were classified by GO and KEGG analyses. The PTEN/PI3K-Akt pathway, Tsc/mTOR signaling, oocyte meiosis and reproduction functions were found in data of differentially expressed genes.
在本研究中,我们调查了日本鳗鲡(Anguilla japonica)早期卵泡发育的卵巢内途径。我们通过下一代测序(NGS)对卵巢的初始发育进行了高通量转录组分析。日本鳗鲡每周接受三次鲑鱼垂体匀浆(SPH)注射。使用RNA测序,我们分别从对照组和SPH注射组获得了29,117,237和41,867,557条读数。结合这些RNA测序数据集,在进行从头组装后,我们总共获得了101,711个单基因(N50 = 1,517bp)。经过差异表达基因(DEG)分析,在注射SPH的卵巢组织中,分别有4,211个和7,059个注释基因上调和下调。此外,通过GO和KEGG分析对注释基因的功能进行了分类。在差异表达基因的数据中发现了PTEN/PI3K-Akt途径、Tsc/mTOR信号传导、卵母细胞减数分裂和生殖功能。