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染色质重塑因子ATRX抑制转录端粒重复序列中的R环。

The chromatin remodelling factor ATRX suppresses R-loops in transcribed telomeric repeats.

作者信息

Nguyen Diu Tt, Voon Hsiao Phin J, Xella Barbara, Scott Caroline, Clynes David, Babbs Christian, Ayyub Helena, Kerry Jon, Sharpe Jacqueline A, Sloane-Stanley Jackie A, Butler Sue, Fisher Chris A, Gray Nicki E, Jenuwein Thomas, Higgs Douglas R, Gibbons Richard J

机构信息

MRC Molecular Haematology Unit, Weatherall Institute of Molecular Medicine, John Radcliffe Hospital, University of Oxford, Oxford, UK.

Department of Biochemistry and Molecular Biology, The Biomedicine Discovery Institute, Monash University, Clayton, Vic., Australia.

出版信息

EMBO Rep. 2017 Jun;18(6):914-928. doi: 10.15252/embr.201643078. Epub 2017 May 9.

DOI:10.15252/embr.201643078
PMID:28487353
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5452009/
Abstract

ATRX is a chromatin remodelling factor found at a wide range of tandemly repeated sequences including telomeres (TTAGGG) ATRX mutations are found in nearly all tumours that maintain their telomeres via the alternative lengthening of telomere (ALT) pathway, and ATRX is known to suppress this pathway. Here, we show that recruitment of ATRX to telomeric repeats depends on repeat number, orientation and, critically, on repeat transcription. Importantly, the transcribed telomeric repeats form RNA-DNA hybrids (R-loops) whose abundance correlates with the recruitment of ATRX Here, we show loss of ATRX is also associated with increased R-loop formation. Our data suggest that the presence of ATRX at telomeres may have a central role in suppressing deleterious DNA secondary structures that form at transcribed telomeric repeats, and this may account for the increased DNA damage, stalling of replication and homology-directed repair previously observed upon loss of ATRX function.

摘要

ATRX是一种染色质重塑因子,存在于包括端粒(TTAGGG)在内的多种串联重复序列中。几乎所有通过端粒替代延长(ALT)途径维持其端粒的肿瘤中都发现了ATRX突变,并且已知ATRX可抑制该途径。在这里,我们表明ATRX募集到端粒重复序列取决于重复序列的数量、方向,关键还取决于重复序列的转录。重要的是,转录的端粒重复序列形成RNA-DNA杂交体(R环),其丰度与ATRX的募集相关。在这里,我们表明ATRX的缺失也与R环形成增加有关。我们的数据表明,端粒处ATRX的存在可能在抑制转录的端粒重复序列处形成的有害DNA二级结构中起核心作用,这可能解释了先前在ATRX功能丧失时观察到的DNA损伤增加、复制停滞和同源定向修复。

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本文引用的文献

1
ATRX binds to atypical chromatin domains at the 3' exons of zinc finger genes to preserve H3K9me3 enrichment.ATRX与锌指基因3'外显子处的非典型染色质结构域结合,以维持H3K9me3富集。
Epigenetics. 2016 Jun 2;11(6):398-414. doi: 10.1080/15592294.2016.1169351. Epub 2016 Mar 30.
2
Dynamic Effects of Topoisomerase I Inhibition on R-Loops and Short Transcripts at Active Promoters.拓扑异构酶I抑制对活性启动子处R环和短转录本的动态影响。
PLoS One. 2016 Jan 19;11(1):e0147053. doi: 10.1371/journal.pone.0147053. eCollection 2016.
3
The Fanconi Anemia Pathway Maintains Genome Stability by Coordinating Replication and Transcription.范可尼贫血通路通过协调复制和转录来维持基因组稳定性。
Mol Cell. 2015 Nov 5;60(3):351-61. doi: 10.1016/j.molcel.2015.09.012. Epub 2015 Oct 22.
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Suppression of the alternative lengthening of telomere pathway by the chromatin remodelling factor ATRX.染色质重塑因子ATRX对端粒替代延长途径的抑制作用。
Nat Commun. 2015 Jul 6;6:7538. doi: 10.1038/ncomms8538.
5
ATRX represses alternative lengthening of telomeres.ATRX抑制端粒的替代延长。
Oncotarget. 2015 Jun 30;6(18):16543-58. doi: 10.18632/oncotarget.3846.
6
Histone H3.3 is required for endogenous retroviral element silencing in embryonic stem cells.组蛋白H3.3是胚胎干细胞中内源性逆转录病毒元件沉默所必需的。
Nature. 2015 Jun 11;522(7555):240-244. doi: 10.1038/nature14345. Epub 2015 May 4.
7
RNaseH1 regulates TERRA-telomeric DNA hybrids and telomere maintenance in ALT tumour cells.核糖核酸酶H1调节端粒重复RNA-端粒DNA杂交体以及端粒酶替代途径(ALT)肿瘤细胞中的端粒维持。
Nat Commun. 2014 Oct 21;5:5220. doi: 10.1038/ncomms6220.
8
Suv39h-dependent H3K9me3 marks intact retrotransposons and silences LINE elements in mouse embryonic stem cells.Suv39h 依赖性 H3K9me3 标记完整的反转录转座子,并使小鼠胚胎干细胞中的 LINE 元件沉默。
Mol Cell. 2014 Jul 17;55(2):277-90. doi: 10.1016/j.molcel.2014.05.029. Epub 2014 Jun 26.
9
ATRX dysfunction induces replication defects in primary mouse cells.ATRX 功能障碍导致原代小鼠细胞的复制缺陷。
PLoS One. 2014 Mar 20;9(3):e92915. doi: 10.1371/journal.pone.0092915. eCollection 2014.
10
R-loops in proliferating cells but not in the brain: implications for AOA2 and other autosomal recessive ataxias.增殖细胞中存在R环,但大脑中不存在:对AOA2和其他常染色体隐性共济失调的影响。
PLoS One. 2014 Mar 17;9(3):e90219. doi: 10.1371/journal.pone.0090219. eCollection 2014.