• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

肌动蛋白结合蛋白古老家族的进化扩张与结构功能主义

Evolutionary expansion and structural functionalism of the ancient family of profilin proteins.

作者信息

Pandey Dhananjay K, Chaudhary Bhupendra

机构信息

School of Biotechnology, Gautam Buddha University, Greater Noida 201310, U.P., India.

School of Biotechnology, Gautam Buddha University, Greater Noida 201310, U.P., India.

出版信息

Gene. 2017 Aug 30;626:70-86. doi: 10.1016/j.gene.2017.05.024. Epub 2017 May 10.

DOI:10.1016/j.gene.2017.05.024
PMID:28501628
Abstract

Structure and functional similarities of a recent protein's orthologs with its ancient counterpart are largely determined by the configuration of evolutionary preservation of amino acids. The emergence of genome sequencing databases allowed dissecting the evolutionarily important gene families at a comprehensive and genome-wide scale. The profilin multi-gene family is an ancient, universal, and functionally diverged across kingdoms, which regulates various aspects of cellular development in both prokarya and eukarya, especially cell-wall maintenance through actin sequestering, nucleation and cytokinesis. We performed a meta-analysis of the evolutionary expansion, structural conservation, evolution of function motifs, and transcriptional biases of profilin proteins across kingdoms. An exhaustive search of various genome databases of cyanobacteria, fungi, animalia and plantae kingdoms revealed 172 paralogous/orthologous profilins those were phylogenetically clustered in various groups. Orthologous gene comparisons indicated that segmental and tandem duplication events under strong purifying selection are predominantly responsible for their convoluted structural divergences. Evidently, structural divergences were more prevalent in the paralogs than orthologs, and evolutionary variations in the exon/intron architecture were accomplished by 'exon/intron-gain' and insertion/deletion during sequence-exonization. Remarkably, temporal expression evolution of profilin paralogs/homeologs during cotton fiber domestication provides evolutionary impressions of the selection of highly diverged transcript abundance notably in the fiber morpho-evolution. These results provide global insights into the profilin evolution, their structural design across taxa; and their future utilization in translational research.

摘要

一种近期蛋白质的直系同源物与其古老对应物在结构和功能上的相似性很大程度上由氨基酸进化保守的配置决定。基因组测序数据库的出现使得能够在全面且全基因组范围内剖析具有进化重要性的基因家族。肌动蛋白结合蛋白多基因家族是一个古老、普遍且在不同生物界功能上有差异的家族,它在原核生物和真核生物中调节细胞发育的各个方面,特别是通过肌动蛋白隔离、成核和胞质分裂来维持细胞壁。我们对不同生物界中肌动蛋白结合蛋白的进化扩张、结构保守性、功能基序的进化以及转录偏向进行了荟萃分析。对蓝细菌、真菌、动物界和植物界的各种基因组数据库进行详尽搜索,发现了172个旁系同源/直系同源肌动蛋白结合蛋白,它们在系统发育上聚为不同的组。直系同源基因比较表明,在强烈的纯化选择下,片段和串联重复事件主要导致它们复杂的结构差异。显然,旁系同源物中的结构差异比直系同源物中更普遍,外显子/内含子结构的进化变异是通过序列外显子化过程中的“外显子/内含子获得”和插入/缺失完成的。值得注意的是,棉纤维驯化过程中肌动蛋白结合蛋白旁系同源物/同源基因的时间表达进化为纤维形态进化过程中高度分化的转录本丰度选择提供了进化印记。这些结果为肌动蛋白结合蛋白的进化、它们在不同分类群中的结构设计以及它们在转化研究中的未来应用提供了全面的见解。

相似文献

1
Evolutionary expansion and structural functionalism of the ancient family of profilin proteins.肌动蛋白结合蛋白古老家族的进化扩张与结构功能主义
Gene. 2017 Aug 30;626:70-86. doi: 10.1016/j.gene.2017.05.024. Epub 2017 May 10.
2
Evolutionary dynamics of the cytoskeletal profilin gene family in Brassica juncea L. reveal its roles in silique development and stress resilience.芸薹属(Brassica juncea L.)细胞骨架丝状肌动蛋白基因家族的进化动态揭示了其在长角果发育和抗逆性中的作用。
Int J Biol Macromol. 2024 May;266(Pt 2):131247. doi: 10.1016/j.ijbiomac.2024.131247. Epub 2024 Mar 31.
3
Divergence of duplicate genes in exon-intron structure.外显子-内含子结构中重复基因的分歧。
Proc Natl Acad Sci U S A. 2012 Jan 24;109(4):1187-92. doi: 10.1073/pnas.1109047109. Epub 2012 Jan 9.
4
Genome-wide analysis of PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE (PDAT) genes in plants reveals the eudicot-wide PDAT gene expansion and altered selective pressures acting on the core eudicot PDAT paralogs.植物中磷脂:二酰甘油酰基转移酶(PDAT)基因的全基因组分析揭示了真双子叶植物中PDAT基因的广泛扩张以及作用于核心真双子叶植物PDAT旁系同源基因的选择性压力变化。
Plant Physiol. 2015 Mar;167(3):887-904. doi: 10.1104/pp.114.253658. Epub 2015 Jan 13.
5
Analysis of septins across kingdoms reveals orthology and new motifs.跨物种分析septin蛋白揭示了直系同源关系和新基序。
BMC Evol Biol. 2007 Jul 1;7:103. doi: 10.1186/1471-2148-7-103.
6
Evolutionary implications of intron-exon distribution and the properties and sequences of the RPL10A gene in eukaryotes.内含子-外显子分布的进化意义以及真核生物中 RPL10A 基因的性质和序列。
Mol Phylogenet Evol. 2013 Mar;66(3):857-67. doi: 10.1016/j.ympev.2012.11.013. Epub 2012 Nov 29.
7
On the origin and evolution of vertebrate and viral profilins.关于脊椎动物和病毒丝切蛋白的起源与进化
FEBS Lett. 2007 Jan 23;581(2):211-7. doi: 10.1016/j.febslet.2006.12.013. Epub 2006 Dec 14.
8
Distinct roles of the first introns on the expression of Arabidopsis profilin gene family members.首个内含子对拟南芥肌动蛋白结合蛋白基因家族成员表达的不同作用。
Plant Physiol. 2006 Jan;140(1):196-209. doi: 10.1104/pp.105.071316. Epub 2005 Dec 16.
9
Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium).独立驯化的二倍体和异源多倍体棉花(棉属)中肌动蛋白结合蛋白基因家族的平行上调。
Proc Natl Acad Sci U S A. 2011 Dec 27;108(52):21152-7. doi: 10.1073/pnas.1115926109. Epub 2011 Dec 12.
10
Comparative genomics and evolution of the HSP90 family of genes across all kingdoms of organisms.跨所有生物界的HSP90基因家族的比较基因组学与进化
BMC Genomics. 2006 Jun 17;7:156. doi: 10.1186/1471-2164-7-156.

引用本文的文献

1
Multiple Mechanisms to Regulate Actin Functions: "Fundamental" Versus Lineage-Specific Mechanisms and Hierarchical Relationships.调控肌动蛋白功能的多种机制:“基础”机制与谱系特异性机制及层级关系
Biomolecules. 2025 Feb 13;15(2):279. doi: 10.3390/biom15020279.
2
Profilin Pfy1 is critical for cell wall integrity and virulence in .肌动蛋白结合蛋白Pfy1对[具体生物名称]的细胞壁完整性和毒力至关重要。 (原文中“in”后面缺少具体内容)
Microbiol Spectr. 2025 Apr;13(4):e0259324. doi: 10.1128/spectrum.02593-24. Epub 2025 Feb 24.
3
Characterization of Cytoskeletal Profilin Genes in Plasticity Elongation of Mesocotyl and Coleoptile of Maize Under Diverse Abiotic Stresses.
不同非生物胁迫下玉米中细胞骨架 Profilin 基因在中胚轴和胚芽鞘可塑性延伸中的特征。
Int J Mol Sci. 2024 Oct 30;25(21):11693. doi: 10.3390/ijms252111693.
4
Multi-omics analysis of green lineage osmotic stress pathways unveils crucial roles of different cellular compartments.多组学分析绿色谱系渗透胁迫途径揭示了不同细胞区室的关键作用。
Nat Commun. 2024 Jul 16;15(1):5988. doi: 10.1038/s41467-024-49844-3.
5
Genome-Wide Analysis of Gene Family Associated with Stress Responses in Cotton ( spp.).棉花(棉属)中与胁迫反应相关基因家族的全基因组分析。
Curr Issues Mol Biol. 2024 Mar 11;46(3):2278-2300. doi: 10.3390/cimb46030146.
6
Exploring the Role of the Plant Actin Cytoskeleton: From Signaling to Cellular Functions.探索植物肌动蛋白细胞骨架的作用:从信号转导到细胞功能。
Int J Mol Sci. 2023 Oct 23;24(20):15480. doi: 10.3390/ijms242015480.
7
Vascular endothelial cell-specific disruption of the gene leads to severe multiorgan pathology and inflammation causing mortality.该基因在血管内皮细胞中的特异性缺失会导致严重的多器官病变和炎症,进而导致死亡。
PNAS Nexus. 2023 Sep 16;2(10):pgad305. doi: 10.1093/pnasnexus/pgad305. eCollection 2023 Oct.
8
Concomitant Expression Evolution of Cell Wall Cytoskeletal Geneic Triad(s) Controls Floral Organ Shape and Fiber Emergence in Cotton ().细胞壁细胞骨架基因三联体的伴随表达进化控制棉花的花器官形态和纤维发育()。
Front Plant Sci. 2022 May 20;13:900521. doi: 10.3389/fpls.2022.900521. eCollection 2022.
9
Circ_0008500 Knockdown Improves Radiosensitivity and Inhibits Tumorigenesis in Breast Cancer Through the miR-758-3p/PFN2 Axis.Circ_0008500敲低通过miR-758-3p/PFN2轴提高乳腺癌的放射敏感性并抑制肿瘤发生。
J Mammary Gland Biol Neoplasia. 2022 Mar;27(1):37-52. doi: 10.1007/s10911-022-09514-w. Epub 2022 Mar 3.
10
Transcriptional loss of domestication-driven cytoskeletal GhPRF1 gene causes defective floral and fiber development in cotton (Gossypium).转录丧失驯化驱动的细胞骨架 GhPRF1 基因导致棉花(Gossypium)花器官和纤维发育缺陷。
Plant Mol Biol. 2021 Dec;107(6):519-532. doi: 10.1007/s11103-021-01200-5. Epub 2021 Oct 4.