Pandey Dhananjay K, Chaudhary Bhupendra
School of Biotechnology, Gautam Buddha University, Greater Noida 201310, U.P., India.
School of Biotechnology, Gautam Buddha University, Greater Noida 201310, U.P., India.
Gene. 2017 Aug 30;626:70-86. doi: 10.1016/j.gene.2017.05.024. Epub 2017 May 10.
Structure and functional similarities of a recent protein's orthologs with its ancient counterpart are largely determined by the configuration of evolutionary preservation of amino acids. The emergence of genome sequencing databases allowed dissecting the evolutionarily important gene families at a comprehensive and genome-wide scale. The profilin multi-gene family is an ancient, universal, and functionally diverged across kingdoms, which regulates various aspects of cellular development in both prokarya and eukarya, especially cell-wall maintenance through actin sequestering, nucleation and cytokinesis. We performed a meta-analysis of the evolutionary expansion, structural conservation, evolution of function motifs, and transcriptional biases of profilin proteins across kingdoms. An exhaustive search of various genome databases of cyanobacteria, fungi, animalia and plantae kingdoms revealed 172 paralogous/orthologous profilins those were phylogenetically clustered in various groups. Orthologous gene comparisons indicated that segmental and tandem duplication events under strong purifying selection are predominantly responsible for their convoluted structural divergences. Evidently, structural divergences were more prevalent in the paralogs than orthologs, and evolutionary variations in the exon/intron architecture were accomplished by 'exon/intron-gain' and insertion/deletion during sequence-exonization. Remarkably, temporal expression evolution of profilin paralogs/homeologs during cotton fiber domestication provides evolutionary impressions of the selection of highly diverged transcript abundance notably in the fiber morpho-evolution. These results provide global insights into the profilin evolution, their structural design across taxa; and their future utilization in translational research.
一种近期蛋白质的直系同源物与其古老对应物在结构和功能上的相似性很大程度上由氨基酸进化保守的配置决定。基因组测序数据库的出现使得能够在全面且全基因组范围内剖析具有进化重要性的基因家族。肌动蛋白结合蛋白多基因家族是一个古老、普遍且在不同生物界功能上有差异的家族,它在原核生物和真核生物中调节细胞发育的各个方面,特别是通过肌动蛋白隔离、成核和胞质分裂来维持细胞壁。我们对不同生物界中肌动蛋白结合蛋白的进化扩张、结构保守性、功能基序的进化以及转录偏向进行了荟萃分析。对蓝细菌、真菌、动物界和植物界的各种基因组数据库进行详尽搜索,发现了172个旁系同源/直系同源肌动蛋白结合蛋白,它们在系统发育上聚为不同的组。直系同源基因比较表明,在强烈的纯化选择下,片段和串联重复事件主要导致它们复杂的结构差异。显然,旁系同源物中的结构差异比直系同源物中更普遍,外显子/内含子结构的进化变异是通过序列外显子化过程中的“外显子/内含子获得”和插入/缺失完成的。值得注意的是,棉纤维驯化过程中肌动蛋白结合蛋白旁系同源物/同源基因的时间表达进化为纤维形态进化过程中高度分化的转录本丰度选择提供了进化印记。这些结果为肌动蛋白结合蛋白的进化、它们在不同分类群中的结构设计以及它们在转化研究中的未来应用提供了全面的见解。