Yeoh Joseph G C, Pandit Aniruddha A, Zandawala Meet, Nässel Dick R, Davies Shireen-Anne, Dow Julian A T
Institute of Molecular, Cell and Systems Biology, College of Medical, Veterinary and Life Sciences, University of Glasgow, G12 8QQ Glasgow, Scotland, UK.
Department of Zoology, Stockholm University, S-10691 Stockholm, Sweden.
Insect Biochem Mol Biol. 2017 Jul;86:9-19. doi: 10.1016/j.ibmb.2017.05.001. Epub 2017 May 11.
Neuropeptides are responsible for regulating a variety of functions, including development, metabolism, water and ion homeostasis, and as neuromodulators in circuits of the central nervous system. Numerous neuropeptides have been identified and characterized. However, both discovery and functional characterization of neuropeptides across the massive Class Insecta has been sporadic. To leverage advances in post-genomic technologies for this rapidly growing field, insect neuroendocrinology requires a consolidated, comprehensive and standardised resource for managing neuropeptide information. The Database for Insect Neuropeptide Research (DINeR) is a web-based database-application used for search and retrieval of neuropeptide information of various insect species detailing their isoform sequences, physiological functionality and images of their receptor-binding sites, in an intuitive, accessible and user-friendly format. The curated data includes representatives of 50 well described neuropeptide families from over 400 different insect species. Approximately 4700 FASTA formatted, neuropeptide isoform amino acid sequences and over 200 records of physiological functionality have been recorded based on published literature. Also available are images of neuropeptide receptor locations. In addition, the data include comprehensive summaries for each neuropeptide family, including their function, location, known functionality, as well as cladograms, sequence alignments and logos covering most insect orders. Moreover, we have adopted a standardised nomenclature to address inconsistent classification of neuropeptides. As part of the H2020 nEUROSTRESSPEP project, the data will be actively maintained and curated, ensuring a comprehensive and standardised resource for the scientific community. DINeR is publicly available at the project website: http://www.neurostresspep.eu/diner/.
神经肽负责调节多种功能,包括发育、新陈代谢、水和离子平衡,以及作为中枢神经系统回路中的神经调质。众多神经肽已被鉴定和表征。然而,在庞大的昆虫纲中,神经肽的发现和功能表征一直是零星的。为了利用后基因组技术在这个快速发展领域的进展,昆虫神经内分泌学需要一个整合、全面且标准化的资源来管理神经肽信息。昆虫神经肽研究数据库(DINeR)是一个基于网络的数据库应用程序,用于以直观、易访问且用户友好的格式搜索和检索各种昆虫物种的神经肽信息,详细介绍其异构体序列、生理功能以及受体结合位点的图像。经过整理的数据包括来自400多种不同昆虫物种的50个描述详尽的神经肽家族的代表。基于已发表的文献,已记录了约4700个FASTA格式的神经肽异构体氨基酸序列和200多条生理功能记录。还提供神经肽受体位置的图像。此外,数据包括每个神经肽家族的全面总结,包括其功能、位置、已知功能,以及涵盖大多数昆虫目的系统发育树、序列比对和序列标识。此外,我们采用了标准化的命名法来解决神经肽分类不一致的问题。作为H2020神经应激肽项目的一部分,这些数据将得到积极维护和整理,确保为科学界提供一个全面且标准化的资源。DINeR可在项目网站上公开获取:http://www.neurostresspep.eu/diner/ 。