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转座因子IS1中开放阅读框的突变分析。

Mutational analysis of the open reading frames in the transposable element IS1.

作者信息

Jakowec M, Prentki P, Chandler M, Galas D J

机构信息

Department of Molecular Biology, University of Southern California, Los Angeles 90089-1340.

出版信息

Genetics. 1988 Sep;120(1):47-55. doi: 10.1093/genetics/120.1.47.

DOI:10.1093/genetics/120.1.47
PMID:2851480
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1203504/
Abstract

IS1 is one of the smallest transposable elements found in bacteria (768 bp). It contains eight overlapping open-reading-frames (ORFs) greater than 50 codons, designated insA to insG and insB'. To determine which of the ORFs actually code for proteins involved in transposition, we have introduced amber codons into each ORF by site-directed mutagenesis which make neutral changes in the overlapping ORFs. Each mutant IS1 was then tested for its ability to mediate cointegrate formation in Su+ and Su- backgrounds. The mutant elements were also tested for trans-complementation in an IS1-free Salmonella background. Our results show that the products of the insA and insB genes are the only ones essential for cointegrate formation. We suggest that other ORFs may, however, encode accessory proteins.

摘要

IS1是在细菌中发现的最小转座元件之一(768个碱基对)。它包含8个重叠的开放阅读框(ORF),长度超过50个密码子,命名为insA至insG以及insB'。为了确定哪些ORF实际上编码参与转座的蛋白质,我们通过定点诱变在每个ORF中引入了琥珀密码子,这些密码子在重叠的ORF中产生中性变化。然后在Su+和Su-背景下测试每个突变型IS1介导共整合体形成的能力。还在无IS1的沙门氏菌背景中测试了突变元件的反式互补作用。我们的结果表明,insA和insB基因的产物是共整合体形成所必需的仅有的蛋白质。然而,我们认为其他ORF可能编码辅助蛋白。

相似文献

1
Mutational analysis of the open reading frames in the transposable element IS1.转座因子IS1中开放阅读框的突变分析。
Genetics. 1988 Sep;120(1):47-55. doi: 10.1093/genetics/120.1.47.
2
Genetic evidence for IS1 transposition regulated by InsA and the delta InsA-B'-InsB species, which is generated by translation from two alternative internal initiation sites and frameshifting.由InsA以及由两个交替内部起始位点翻译和移码产生的δ InsA - B'- InsB物种调控IS1转座的遗传证据。
J Mol Biol. 1994 Jul 1;240(1):52-65. doi: 10.1006/jmbi.1994.1417.
3
Evidence for a role of translational frameshifting in the expression of transposition activity of the bacterial insertion element IS1.关于翻译移码在细菌插入元件IS1转座活性表达中作用的证据。
Gene. 1990 Mar 30;88(1):15-20. doi: 10.1016/0378-1119(90)90054-u.
4
[Study of the role of the insA open reading frame in the IS1 insertion element structure during transposition and resolution of the IS1 mediated cointegrates].[关于insA开放阅读框在IS1介导的共整合体转座和拆分过程中在IS1插入元件结构中的作用的研究]
Mol Biol (Mosk). 1990 Nov-Dec;24(6):1549-61.
5
Insertion element IS1 encodes two structural genes required for its transposition.插入元件IS1编码其转座所需的两个结构基因。
J Mol Biol. 1984 Aug 5;177(2):229-45. doi: 10.1016/0022-2836(84)90454-6.
6
IS1-encoded proteins, InsA and the InsA-B'-InsB transframe protein (transposase): functions deduced from their DNA-binding ability.由插入序列1(IS1)编码的蛋白质InsA和InsA-B'-InsB移码蛋白(转座酶):从其DNA结合能力推导的功能
Adv Biophys. 1995;31:209-22. doi: 10.1016/0065-227x(95)99393-4.
7
The insE open reading frame of IS1 is not required for formation of cointegrates.IS1的insE开放阅读框对于共整合体的形成并非必需。
J Bacteriol. 1996 Apr;178(8):2420-3. doi: 10.1128/jb.178.8.2420-2423.1996.
8
Expression of proteins essential for IS1 transposition: specific binding of InsA to the ends of IS1.IS1转座所需蛋白质的表达:InsA与IS1末端的特异性结合。
EMBO J. 1987 Oct;6(10):3163-9. doi: 10.1002/j.1460-2075.1987.tb02627.x.
9
Regulation of IS1 transposition by the insA gene product.insA基因产物对IS1转座的调控。
J Mol Biol. 1989 Aug 20;208(4):567-74. doi: 10.1016/0022-2836(89)90148-4.
10
Translational control of transposition activity of the bacterial insertion sequence IS1.细菌插入序列IS1转座活性的翻译调控
EMBO J. 1991 Mar;10(3):705-12. doi: 10.1002/j.1460-2075.1991.tb08000.x.

引用本文的文献

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Antimicrob Agents Chemother. 2008 Jul;52(7):2581-92. doi: 10.1128/AAC.01540-07. Epub 2008 May 5.
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Presence of a characteristic D-D-E motif in IS1 transposase.插入序列1(IS1)转座酶中特征性D-D-E基序的存在。
J Bacteriol. 2002 Nov;184(22):6146-54. doi: 10.1128/JB.184.22.6146-6154.2002.
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Involvement of H-NS in transpositional recombination mediated by IS1.H-NS参与由IS1介导的转座重组。
J Bacteriol. 2001 Apr;183(8):2476-84. doi: 10.1128/JB.183.8.2476-2484.2001.
5
Insertion sequences.插入序列
Microbiol Mol Biol Rev. 1998 Sep;62(3):725-74. doi: 10.1128/MMBR.62.3.725-774.1998.
6
Detection of an IS2-encoded 46-kilodalton protein capable of binding terminal repeats of IS2.检测一种能够结合IS2末端重复序列的由IS2编码的46千道尔顿蛋白。
J Bacteriol. 1996 Oct;178(19):5652-9. doi: 10.1128/jb.178.19.5652-5659.1996.
7
The insE open reading frame of IS1 is not required for formation of cointegrates.IS1的insE开放阅读框对于共整合体的形成并非必需。
J Bacteriol. 1996 Apr;178(8):2420-3. doi: 10.1128/jb.178.8.2420-2423.1996.
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Is the IS1 transposase, InsAB', the only IS1-encoded protein required for efficient transposition?IS1转座酶InsAB'是高效转座所需的唯一一种由IS1编码的蛋白质吗?
J Bacteriol. 1994 Sep;176(18):5864-7. doi: 10.1128/jb.176.18.5864-5867.1994.
9
Method for selection of transposable DNA and characterization of a new insertion sequence, IS493, from Streptomyces lividans.从淡紫链霉菌中筛选转座DNA及鉴定新插入序列IS493的方法。
J Bacteriol. 1989 Sep;171(9):4807-13. doi: 10.1128/jb.171.9.4807-4813.1989.
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Use of synthetic ribosome binding site for overproduction of the 5B protein of insertion sequence IS5.
Nucleic Acids Res. 1989 Mar 11;17(5):1933-51. doi: 10.1093/nar/17.5.1933.

本文引用的文献

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Insertion of nucleotides opposite apurinic/apyrimidinic sites in deoxyribonucleic acid during in vitro synthesis: uniqueness of adenine nucleotides.体外合成过程中脱氧核糖核酸中无嘌呤/无嘧啶位点对面核苷酸的插入:腺嘌呤核苷酸的独特性
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Cointegrate formation mediated by Tn9. II. Activity of IS1 is modulated by external DNA sequences.由Tn9介导的共整合体形成。II. IS1的活性受外部DNA序列调控。
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Revised sequence of the tetracycline-resistance gene of pBR322.pBR322四环素抗性基因的修订序列。
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6
Structure and stability of Tn9-mediated cointegrates. Evidence for two pathways of transposition.Tn9介导的共整合体的结构与稳定性。转座两条途径的证据。
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Genesis and natural history of IS-mediated transposons.插入序列介导的转座子的起源与自然史。
Cold Spring Harb Symp Quant Biol. 1981;45 Pt 1:27-43. doi: 10.1101/sqb.1981.045.01.006.
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Functional interchangeability of DNA replication genes in Salmonella typhimurium and Escherichia coli demonstrated by a general complementation procedure.通过通用互补程序证明鼠伤寒沙门氏菌和大肠杆菌中DNA复制基因的功能互换性。
Genetics. 1984 Sep;108(1):1-23. doi: 10.1093/genetics/108.1.1.
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Protein-DNA recognition.蛋白质-脱氧核糖核酸识别
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Precise location of two promoters for the beta-lactamase gene of pBR322. S1 mapping of ribonucleic acid isolated from Escherichia coli or synthesized in vitro.pBR322中β-内酰胺酶基因两个启动子的精确定位。从大肠杆菌中分离或体外合成的核糖核酸的S1图谱分析。
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