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韩国人群Wilson 病的载频:一种基于 DNA 的方法。

Carrier frequency of Wilson's disease in the Korean population: a DNA-based approach.

机构信息

Genome Research Center, Green Cross Genome, Yong-in, Republic of Korea.

Green Cross Laboratories, Yong-in, Republic of Korea.

出版信息

J Hum Genet. 2017 Sep;62(9):815-818. doi: 10.1038/jhg.2017.49. Epub 2017 May 18.

DOI:10.1038/jhg.2017.49
PMID:28515472
Abstract

Wilson's disease (WD) is an autosomal recessive disorder caused by ATP7B gene mutation. The frequency of WD is about 1 in 30 000 worldwide. In the present study, we screened 14 835 dried blood spots (DBSs) from asymptomatic Korean neonates and retrospectively reviewed massively parallel sequencing of 1090 control individuals to estimate carrier frequency. TaqMan real-time PCR assays were conducted to detect six mutations that account for 58.3% of mutations in Korean WD patients: c.2333G>T (p.Arg778Leu), c.2621C>T (p.Ala874Val), c.3086C>T (p.Thr1029Ile), c.3247C>T (p.Leu1083Phe), c.3556G>A (p.Gly1186Ser) and c.3809A>G (p.Asn1270Ser). We also retrospectively reviewed data from 1090 individuals with various indications other than WD for whom whole-exome or panel sequencing data were available. Mutant allele frequency based on the six most common mutations was 0.0067 among the total of 14 835 DBSs screened. Given that these six mutations account for 58.3% of mutations in Korean WD patients, the corrected mutant allele frequency is 0.0115 (95% confidence interval (CI): 0.0103-0.0128). Corresponding incidence (q) and carrier frequency (2pq) were estimated to be 1:7561 and 1:44, respectively. In retrospective data analysis of 1090 control individuals, allele frequency of pathogenic or likely pathogenic variants was 0.0096 (95% CI: 0.0063-0.0146). Corresponding carrier frequency was estimated to be 1:53. Estimated allele and carrier frequencies based on DNA screening were relatively higher than those reported previously based on clinical ascertainment.

摘要

威尔逊病 (WD) 是一种由 ATP7B 基因突变引起的常染色体隐性遗传病。WD 的发病率约为全球每 30000 人中 1 例。本研究对 14835 份无症状韩国新生儿的干血斑 (DBS) 进行了筛查,并回顾性分析了 1090 名对照个体的大规模平行测序,以估计携带者频率。采用 TaqMan 实时 PCR 法检测了导致韩国 WD 患者 58.3%突变的 6 种突变:c.2333G>T(p.Arg778Leu)、c.2621C>T(p.Ala874Val)、c.3086C>T(p.Thr1029Ile)、c.3247C>T(p.Leu1083Phe)、c.3556G>A(p.Gly1186Ser)和 c.3809A>G(p.Asn1270Ser)。我们还回顾性分析了 1090 名患有除 WD 以外的各种疾病的个体的资料,这些个体的全外显子或 panel 测序数据可用。在筛查的 14835 份 DBS 中,基于这 6 种最常见突变的突变等位基因频率为 0.0067。鉴于这 6 种突变导致韩国 WD 患者 58.3%的突变,校正后的突变等位基因频率为 0.0115(95%置信区间[CI]:0.0103-0.0128)。相应的发病率 (q) 和携带者频率 (2pq) 估计分别为 1:7561 和 1:44。在对 1090 名对照个体的回顾性数据分析中,致病性或可能致病性变异的等位基因频率为 0.0096(95%CI:0.0063-0.0146)。相应的携带者频率估计为 1:53。基于 DNA 筛查的估计等位基因和携带者频率明显高于之前基于临床确定的报告频率。

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