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FLP重组酶加载到其DNA靶序列上的机制。

The mechanism of loading of the FLP recombinase onto its DNA target sequence.

作者信息

Beatty L G, Sadowski P D

机构信息

Department of Medical Genetics, University of Toronto, Ontario, Canada.

出版信息

J Mol Biol. 1988 Nov 20;204(2):283-94. doi: 10.1016/0022-2836(88)90576-1.

DOI:10.1016/0022-2836(88)90576-1
PMID:2851660
Abstract

The FLP recombinase interacts with its target sequence with the formation of three distinct DNA-protein complexes. The first complex leaves neither a DNase footprint nor is the DNA protected from methylation by dimethyl sulfate. We have found, however, that the FLP protein is bound predominantly to only one of the three 13 base-pair (bp) symmetry elements. This asymmetric loading of the FLP site seems to require the presence of an adjacent directly repeated 13 bp element. We speculate that this asymmetric filling of the target site may be accompanied by the unique order of cleavage and exchange of DNA strands.

摘要

FLP重组酶与它的靶序列相互作用,形成三种不同的DNA-蛋白质复合物。第一种复合物既不留下DNA酶足迹,也不能使DNA免受硫酸二甲酯的甲基化作用。然而,我们发现,FLP蛋白主要仅与三个13碱基对(bp)对称元件中的一个结合。FLP位点的这种不对称加载似乎需要相邻直接重复的13 bp元件的存在。我们推测,靶位点的这种不对称填充可能伴随着DNA链切割和交换的独特顺序。

相似文献

1
The mechanism of loading of the FLP recombinase onto its DNA target sequence.FLP重组酶加载到其DNA靶序列上的机制。
J Mol Biol. 1988 Nov 20;204(2):283-94. doi: 10.1016/0022-2836(88)90576-1.
2
Asymmetry in active complexes of FLP recombinase.FLP重组酶活性复合物中的不对称性。
Genes Dev. 1995 Aug 15;9(16):2053-64. doi: 10.1101/gad.9.16.2053.
3
Tyr60 variants of Flp recombinase generate conformationally altered protein-DNA complexes. Differential activity in full-site and half-site recombinations.Flp重组酶的Tyr60变体产生构象改变的蛋白质-DNA复合物。全位点和半位点重组中的差异活性。
J Mol Biol. 1991 Mar 5;218(1):107-18. doi: 10.1016/0022-2836(91)90877-9.
4
FLP protein of 2 mu circle plasmid of yeast induces multiple bends in the FLP recognition target site.酵母2μm环状质粒的FLP蛋白在FLP识别靶位点诱导多个弯曲。
J Mol Biol. 1990 Nov 20;216(2):289-98. doi: 10.1016/s0022-2836(05)80320-1.
5
FLP recombinase of the 2 microns circle plasmid of Saccharomyces cerevisiae bends its DNA target. Isolation of FLP mutants defective in DNA bending.酿酒酵母2微米环状质粒的FLP重组酶使其DNA靶点弯曲。分离出在DNA弯曲方面有缺陷的FLP突变体。
J Mol Biol. 1989 Feb 20;205(4):647-58. doi: 10.1016/0022-2836(89)90310-0.
6
Interaction of the NH2- and COOH-terminal domains of the FLP recombinase with the FLP recognition target sequence.
J Biol Chem. 1994 Apr 8;269(14):10940-5.
7
Functional analysis of Arg-308 mutants of Flp recombinase. Possible role of Arg-308 in coupling substrate binding to catalysis.
J Biol Chem. 1990 Mar 15;265(8):4527-33.
8
The role of DNA bending in Flp-mediated site-specific recombination.DNA弯曲在Flp介导的位点特异性重组中的作用。
J Mol Biol. 1995 Aug 25;251(4):493-506. doi: 10.1006/jmbi.1995.0451.
9
Step-arrest mutants of FLP recombinase: implications for the catalytic mechanism of DNA recombination.FLP重组酶的逐步抑制突变体:对DNA重组催化机制的影响
Mol Cell Biol. 1988 Aug;8(8):3303-10. doi: 10.1128/mcb.8.8.3303-3310.1988.
10
Domain of a yeast site-specific recombinase (Flp) that recognizes its target site.识别其靶位点的酵母位点特异性重组酶(Flp)的结构域。
Proc Natl Acad Sci U S A. 1991 Jul 15;88(14):5944-8. doi: 10.1073/pnas.88.14.5944.

引用本文的文献

1
Determinants of the position of a Flp-induced DNA bend.Flp诱导的DNA弯曲位置的决定因素。
Nucleic Acids Res. 1998 Mar 15;26(6):1401-7. doi: 10.1093/nar/26.6.1401.
2
Selection of novel, specific single-stranded DNA sequences by Flp, a duplex-specific DNA binding protein.利用双链特异性DNA结合蛋白Flp筛选新型、特异性单链DNA序列。
Nucleic Acids Res. 1998 Mar 1;26(5):1329-36. doi: 10.1093/nar/26.5.1329.
3
Asymmetry in Flp-mediated cleavage.Flp介导的切割中的不对称性。
Nucleic Acids Res. 1997 Nov 1;25(21):4240-9. doi: 10.1093/nar/25.21.4240.
4
Chemical probe and missing nucleoside analysis of Flp recombinase bound to the recombination target sequence.
Nucleic Acids Res. 1995 Aug 11;23(15):3009-17. doi: 10.1093/nar/23.15.3009.
5
Synthesis of an enzymatically active FLP recombinase in vitro: search for a DNA-binding domain.体外合成具有酶活性的FLP重组酶:寻找DNA结合结构域。
Mol Cell Biol. 1989 May;9(5):1987-95. doi: 10.1128/mcb.9.5.1987-1995.1989.
6
Synapsis, strand scission, and strand exchange induced by the FLP recombinase: analysis with half-FRT sites.FLP重组酶诱导的联会、链断裂和链交换:利用半FRT位点进行分析
Mol Cell Biol. 1991 Sep;11(9):4497-508. doi: 10.1128/mcb.11.9.4497-4508.1991.
7
The FLP protein contacts both major and minor grooves of its recognition target sequence.
Nucleic Acids Res. 1992 Nov 25;20(22):5927-35. doi: 10.1093/nar/20.22.5927.