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Draft Genome Sequences of Seven Bacterial Strains Isolated from a Polymicrobial Culture of Coccolith-Bearing (C-Type) Emiliania huxleyi M217.从含颗石（C型）赫氏颗石藻M217的多菌种培养物中分离出的七株细菌菌株的基因组序列草图
Genome Announc. 2016 Jul 14;4(4):e00673-16. doi: 10.1128/genomeA.00673-16.
3
The Pfam protein families database: towards a more sustainable future.Pfam蛋白质家族数据库：迈向更可持续的未来。
Nucleic Acids Res. 2016 Jan 4;44(D1):D279-85. doi: 10.1093/nar/gkv1344. Epub 2015 Dec 15.
4
Draft Genome Sequence of Roseovarius tolerans EL-164, a Producer of N-Acylated Alanine Methyl Esters and N-Acylhomoserine Lactones.耐盐玫瑰色杆菌EL-164的基因组草图序列，N-酰化丙氨酸甲酯和N-酰基高丝氨酸内酯的生产者
Genome Announc. 2015 Sep 24;3(5):e01096-15. doi: 10.1128/genomeA.01096-15.
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A novel enzyme-based antimicrobial system comprising iodide and a multicopper oxidase isolated from Alphaproteobacterium strain Q-1.一种新型的基于酶的抗菌系统，其包含碘化物和从α-变形杆菌菌株Q-1中分离出的多铜氧化酶。
Appl Microbiol Biotechnol. 2015 Dec;99(23):10011-8. doi: 10.1007/s00253-015-6862-0. Epub 2015 Aug 9.
6
Large-scale contamination of microbial isolate genomes by Illumina PhiX control.Illumina PhiX对照对微生物分离株基因组的大规模污染。
Stand Genomic Sci. 2015 Mar 30;10:18. doi: 10.1186/1944-3277-10-18. eCollection 2015.
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Genome sequence of the Roseovarius mucosus type strain (DSM 17069(T)), a bacteriochlorophyll a-containing representative of the marine Roseobacter group isolated from the dinoflagellate Alexandrium ostenfeldii.黏液玫瑰杆菌模式菌株（DSM 17069(T)）的基因组序列，该菌株是从甲藻亚历山大藻中分离出的含细菌叶绿素a的海洋玫瑰杆菌群的代表菌株。
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8
A putative multicopper oxidase, IoxA, is involved in iodide oxidation by Roseovarius sp. strain A-2.一种假定的多铜氧化酶IoxA参与了玫瑰色弧菌A-2菌株对碘化物的氧化作用。
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9
CDD: NCBI's conserved domain database.CDD：美国国家生物技术信息中心的保守结构域数据库。
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10
Draft genome sequence of strain q-1, an iodide-oxidizing alphaproteobacterium isolated from natural gas brine water.菌株q-1的基因组草图序列，该菌株是从天然气卤水中分离出的一种能氧化碘化物的α-变形菌。
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从日本千叶的天然气卤水中分离出的碘氧化细菌A-2菌株的基因组序列草图

Draft Genome Sequence of sp. A-2, an Iodide-Oxidizing Bacterium Isolated from Natural Gas Brine Water, Chiba, Japan.

作者信息

Yuliana Tri, Nakajima Nobuyoshi, Yamamura Shigeki, Tomita Masaru, Suzuki Haruo, Amachi Seigo

机构信息

Graduate School of Horticulture, Chiba University, Matsudo City, Chiba, Japan.

Food Technology Department, Padjadjaran University, Bandung, Indonesia.

出版信息

J Genomics. 2017 Apr 6;5:51-53. doi: 10.7150/jgen.19846. eCollection 2017.

DOI:10.7150/jgen.19846
PMID:28529651
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5436463/
Abstract

sp. A-2 is a heterotrophic iodide (I)-oxidizing bacterium isolated from iodide-rich natural gas brine water in Chiba, Japan. This strain oxidizes iodide to molecular iodine (I) by means of an extracellular multicopper oxidase. Here we report the draft genome sequence of strain A-2. The draft genome contained 46 tRNA genes, 1 copy of a 16S-23S-5S rRNA operon, and 4,514 protein coding DNA sequences, of which 1,207 (27%) were hypothetical proteins. The genome contained a gene encoding IoxA, a multicopper oxidase previously found to catalyze the oxidation of iodide in sp. Q-1. This draft genome provides detailed insights into the metabolism and potential application of sp. A-2.

摘要

菌株A-2是从日本千叶富含碘化物的天然气卤水中分离出的一种异养型碘化物（I）氧化细菌。该菌株通过一种细胞外多铜氧化酶将碘化物氧化为分子碘（I₂）。在此，我们报告菌株A-2的基因组草图序列。该基因组草图包含46个tRNA基因、1个16S - 23S - 5S rRNA操纵子拷贝以及4514个蛋白质编码DNA序列，其中1207个（27%）为假定蛋白。该基因组包含一个编码IoxA的基因，IoxA是一种先前在菌株Q-1中发现可催化碘化物氧化的多铜氧化酶。该基因组草图为深入了解菌株A-2的代谢和潜在应用提供了详细信息。