Department of Chemistry, Boston University , Boston, Massachusetts 02215, United States.
J Phys Chem B. 2017 Jun 15;121(23):5770-5780. doi: 10.1021/acs.jpcb.6b11711. Epub 2017 Jun 6.
Freezing and melting of dipalmitoylphosphatidylcholine (DPPC) bilayers are simulated in both the explicit (Wet) and implicit solvent (Dry) coarse-grained MARTINI force fields with enhanced sampling, via the isobaric, molecular dynamics version of the generalized replica exchange method (gREM). Phase transitions are described with the entropic viewpoint, based upon the statistical temperature as a function of enthalpy, T(H) = 1/(dS(H)/dH), where S is the configurational entropy. Bilayer thickness, area per lipid, and the second-rank order parameter (P2) are calculated vs temperature in the transition range. In a 32-lipid Wet MARTINI system, transitions in the lipid and water subsystems are strongly coupled, giving rise to considerable structure in T(H) and the need to specify the state of the water when reporting a lipid transition temperature. For gel lipid + liquid water → fluid lipid + liquid water, we find 292.4 K. The small system is influenced by finite-size effects, but it is argued that the entropic approach is well suited to revealing them, which will be particularly relevant for studies of finite nanosystems where there is no thermodynamic limit. In a 390-lipid Dry MARTINI system, two-dimensional analogues of the topographies of coexisting states ("subphases") seen in pure fluids are found. They are not seen in the 32-lipid Wet or Dry system, but the Dry lipids show a new type of state with gel in one leaflet and tilted gel in the other. Dry bilayer transition temperatures are 333.3 K (390 lipids) and 338 K (32 lipids), indicating that the 32-lipid system is not too small for a qualitative study of the transition. Physical arguments are given for Dry lipid system size dependence and for the difference between Wet and Dry systems.
在显式(湿)和隐式溶剂(干)粗粒化 MARTINI 力场中,通过等压、分子动力学广义复制交换方法(gREM)的增强采样,模拟了二棕榈酰磷脂酰胆碱(DPPC)双层的冷冻和融化。基于统计温度作为焓的函数,T(H) = 1/(dS(H)/dH),其中 S 是构象熵,从熵的角度描述相变。在相变范围内,计算了双层厚度、每个脂质的面积和二阶序参数(P2)随温度的变化。在 32 个脂质湿 MARTINI 系统中,脂质和水亚系统的转变强烈耦合,导致 T(H) 中出现相当大的结构,并且在报告脂质转变温度时需要指定水的状态。对于凝胶脂质+液态水→流态脂质+液态水,我们发现 292.4 K。小系统受有限尺寸效应的影响,但有人认为熵方法非常适合揭示这些效应,这对于研究没有热力学极限的有限纳米系统将特别相关。在 390 个脂质干 MARTINI 系统中,发现了共存状态(“亚相”)二维拓扑的二维类似物。在 32 个脂质湿或干系统中都没有看到,但干脂质显示出一种新的状态,一个叶有凝胶,另一个叶有倾斜凝胶。干双层转变温度为 333.3 K(390 个脂质)和 338 K(32 个脂质),表明 32 个脂质系统对于定性研究转变来说还不算太小。给出了干脂质系统尺寸依赖性和湿与干系统之间差异的物理论据。