Garcia D A, Rosa G J M, Valente B D, Carvalheiro R, Fernandes Júnior G A, Albuquerque L G
1Department of Animal Science,UNESP,Jaboticabal,SP 14884-900,Brazil.
2Department of Animal Science,University of Wisconsin-Madison,Madison,WI 53706,USA.
Animal. 2017 Dec;11(12):2113-2119. doi: 10.1017/S1751731117001136. Epub 2017 May 23.
The aim of the present study was to evaluate the prediction ability of models that cope with longevity phenotypic expression as uncensored and censored in Nellore cattle. Longevity was defined as the difference between the dates of last weaned calf and cow birth. There were information of 77 353 females, being 61 097 cows with uncensored phenotypic information and 16 256 cows with censored records. These data were analyzed considering three different models: (1) Gaussian linear model (LM), in which only uncensored records were considered; and two models that consider both uncensored and censored records: (2) Censored Gaussian linear model (CLM); and (3) Weibull frailty hazard model (WM). For the model prediction ability comparisons, the data set was randomly divided into training and validation sets, containing 80% and 20% of the records, respectively. There were considered 10 repetitions applying the following restrictions: (a) at least three animals per contemporary group in the training set; and (b) sires with more than 10 progenies with uncensored records (352 sires) should have daughters in the training and validation sets. The variance components estimated using the whole data set in each model were used as true values in the prediction of breeding values of the animals in the training set. The WM model showed the best prediction ability, providing the lowest χ 2 average and the highest number of sets in which a model had the smallest value of χ 2 statistics. The CLM and LM models showed prediction abilities 2.6% and 3.7% less efficient than WM, respectively. In addition, the accuracies of sire breeding values for LM and CLM were lower than those obtained for WM. The percentages of bulls in common, considering only 10% of sires with the highest breeding values, were around 75% and 54%, respectively, between LM-CLM and LM-WM models, considering all sires, and 75% between LM-CLM and LM-WM, when only sires with more than 10 progenies with uncensored records were taken into account. These results are indicative of reranking of animals in terms of genetic merit between LM, CLM and WM. The model in which censored records of longevity were excluded from the analysis showed the lowest prediction ability. The WM provides the best predictive performance, therefore this model would be recommended to perform genetic evaluation of longevity in this population.
本研究的目的是评估处理内洛尔牛长寿表型表达的模型在无删失和删失情况下的预测能力。长寿定义为最后一头断奶犊牛出生日期与母牛出生日期之间的差值。共有77353头雌性牛的信息,其中61097头母牛有未删失的表型信息,16256头母牛有删失记录。这些数据采用三种不同模型进行分析:(1)高斯线性模型(LM),该模型仅考虑未删失记录;以及另外两种同时考虑未删失和删失记录的模型:(2)删失高斯线性模型(CLM);(3)威布尔脆弱风险模型(WM)。为了比较模型的预测能力,数据集被随机分为训练集和验证集,分别包含80%和20%的记录。考虑了10次重复,并应用以下限制条件:(a)训练集中每个当代组至少有三头动物;(b)具有超过10头有未删失记录后代的公牛(352头公牛)在训练集和验证集中均应有女儿。在每个模型中使用整个数据集估计的方差成分被用作训练集中动物育种值预测的真实值。WM模型显示出最佳的预测能力,χ²平均值最低,且在χ²统计量值最小的模型中所占集合数量最多。CLM和LM模型的预测能力分别比WM低2.6%和3.7%。此外,LM和CLM的父系育种值准确性低于WM。仅考虑育种值最高的10%公牛时,LM - CLM和LM - WM模型之间的共有公牛百分比分别约为75%和54%(考虑所有公牛),当仅考虑具有超过10头有未删失记录后代的公牛时,LM - CLM和LM - WM之间为75%。这些结果表明在LM、CLM和WM之间,动物在遗传价值方面存在重新排序。将长寿的删失记录排除在分析之外的模型显示出最低的预测能力。WM提供了最佳的预测性能,因此建议使用该模型对该群体的长寿进行遗传评估。