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《冰封近五十载:遗传密码进化中的立体化学、扩展与机遇》

Frozen Accident Pushing 50: Stereochemistry, Expansion, and Chance in the Evolution of the Genetic Code.

作者信息

Koonin Eugene V

机构信息

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.

出版信息

Life (Basel). 2017 May 23;7(2):22. doi: 10.3390/life7020022.

Abstract

Nearly 50 years ago, Francis Crick propounded the frozen accident scenario for the evolution of the genetic code along with the hypothesis that the early translation system consisted primarily of RNA. Under the frozen accident perspective, the code is universal among modern life forms because any change in codon assignment would be highly deleterious. The frozen accident can be considered the default theory of code evolution because it does not imply any specific interactions between amino acids and the cognate codons or anticodons, or any particular properties of the code. The subsequent 49 years of code studies have elucidated notable features of the standard code, such as high robustness to errors, but failed to develop a compelling explanation for codon assignments. In particular, stereochemical affinity between amino acids and the cognate codons or anticodons does not seem to account for the origin and evolution of the code. Here, I expand Crick's hypothesis on RNA-only translation system by presenting evidence that this early translation already attained high fidelity that allowed protein evolution. I outline an experimentally testable scenario for the evolution of the code that combines a distinct version of the stereochemical hypothesis, in which amino acids are recognized via unique sites in the tertiary structure of proto-tRNAs, rather than by anticodons, expansion of the code via proto-tRNA duplication, and the frozen accident.

摘要

近50年前,弗朗西斯·克里克提出了遗传密码进化的“冻结偶然”假说,同时还提出早期翻译系统主要由RNA组成的假说。在“冻结偶然”的观点下,密码在现代生命形式中是通用的,因为密码子分配的任何变化都将是极其有害的。“冻结偶然”可以被视为密码进化的默认理论,因为它并不意味着氨基酸与同源密码子或反密码子之间存在任何特定的相互作用,也不意味着密码具有任何特殊性质。在随后的49年里,对密码的研究阐明了标准密码的显著特征,比如对错误具有高度鲁棒性,但未能对密码子分配给出令人信服的解释。特别是,氨基酸与同源密码子或反密码子之间的立体化学亲和力似乎无法解释密码的起源和进化。在此,我通过提供证据扩展了克里克关于仅由RNA组成的翻译系统的假说,即这种早期翻译已经具备了允许蛋白质进化的高保真度。我概述了一个关于密码进化的可通过实验检验的假说,该假说结合了立体化学假说的一个独特版本,即氨基酸是通过原tRNA三级结构中的独特位点而非反密码子被识别,通过原tRNA复制实现密码扩展,以及“冻结偶然”。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9704/5492144/32130360781b/life-07-00022-g001.jpg

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