Suturina Elizaveta A, Häussinger Daniel, Zimmermann Kaspar, Garbuio Luca, Yulikov Maxim, Jeschke Gunnar, Kuprov Ilya
School of Chemistry , University of Southampton , Highfield Campus , Southampton , SO17 1BJ , UK . Email:
Department of Chemistry , University of Basel , St. Johanns Ring 19 , CH-4056 Basel , Switzerland.
Chem Sci. 2017 Apr 1;8(4):2751-2757. doi: 10.1039/c6sc03736d. Epub 2017 Jan 20.
A significant problem with paramagnetic tags attached to proteins and nucleic acids is their conformational mobility. Each tag is statistically distributed within a volume between 5 and 10 Angstroms across; structural biology conclusions from NMR and EPR work are necessarily diluted by this uncertainty. The problem is solved in electron spin resonance, but remains open in the other major branch of paramagnetic resonance - pseudocontact shift (PCS) NMR spectroscopy, where structural biologists have so far been reluctantly using the point paramagnetic centre approximation. Here we describe a new method for extracting probability densities of lanthanide tags from PCS data. The method relies on Tikhonov-regularised 3D reconstruction and opens a new window into biomolecular structure and dynamics because it explores a very different range of conditions from those accessible to double electron resonance work on paramagnetic tags: a room-temperature solution rather than a glass at cryogenic temperatures. The method is illustrated using four different Tm DOTA-M8 tagged mutants of human carbonic anhydrase II; the results are in good agreement with rotamer library and DEER data. The wealth of high-quality pseudocontact shift data accumulated by the biological magnetic resonance community over the last 30 years, and so far only processed using point models, could now become a major source of useful information on conformational distributions of paramagnetic tags in biomolecules.
附着于蛋白质和核酸上的顺磁标记存在一个重大问题,即其构象流动性。每个标记在统计上分布于一个跨度为5至10埃的体积内;核磁共振(NMR)和电子顺磁共振(EPR)研究得出的结构生物学结论必然会因这种不确定性而被稀释。这个问题在电子自旋共振中得到了解决,但在顺磁共振的另一个主要分支——伪接触位移(PCS)核磁共振光谱中仍然存在,在该领域,结构生物学家迄今一直勉强使用点顺磁中心近似法。在此,我们描述了一种从PCS数据中提取镧系标记概率密度的新方法。该方法依赖于蒂洪诺夫正则化三维重建,为生物分子结构和动力学打开了一扇新窗口,因为它探索的条件范围与顺磁标记的双电子共振研究可达到的条件截然不同:是室温溶液而非低温下的玻璃态。我们使用人碳酸酐酶II的四种不同的铥-二氧四氮杂环十二烷- M8标记突变体对该方法进行了说明;结果与旋转异构体文库和双电子电子自旋共振(DEER)数据高度吻合。生物磁共振学界在过去30年积累的大量高质量伪接触位移数据,迄今为止仅使用点模型进行处理,现在可能成为有关生物分子中顺磁标记构象分布的有用信息的主要来源。