• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

关于持续性多位点磷酸化系统的一个全面的全局收敛结果。

An all-encompassing global convergence result for processive multisite phosphorylation systems.

作者信息

Eithun Mitchell, Shiu Anne

机构信息

Department of Mathematical Sciences, Ripon College, Ripon, WI 54971, USA.

Department of Mathematics, Texas A&M University, College Station, TX 77843-3368, USA.

出版信息

Math Biosci. 2017 Sep;291:1-9. doi: 10.1016/j.mbs.2017.05.006. Epub 2017 Jun 29.

DOI:10.1016/j.mbs.2017.05.006
PMID:28600136
Abstract

Phosphorylation, the enzyme-mediated addition of a phosphate group to a molecule, is a ubiquitous chemical mechanism in biology. Multisite phosphorylation, the addition of phosphate groups to multiple sites of a single molecule, may be distributive or processive. Distributive systems, which require an enzyme and substrate to bind several times in order to add multiple phosphate groups, can be bistable. Processive systems, in contrast, require only one binding to add all phosphate groups, and were recently shown to be globally stable. However, this global convergence result was proven only for a specific mechanism of processive phosphorylation/dephosphorylation (namely, all catalytic reactions are reversible). Accordingly, we generalize this result to allow for processive phosphorylation networks in which each reaction may be irreversible, and also to account for possible product inhibition. We accomplish this by first defining an all-encompassing processive network that encapsulates all of these schemes, and then appealing to recent results of Marcondes de Freitas et al. that assert global convergence by way of monotone systems theory and network/graph reductions (corresponding to removing intermediate complexes). Our results form a case study into the question of when global convergence is preserved when reactions and/or intermediate complexes are added to or removed from a network.

摘要

磷酸化是一种在生物学中普遍存在的化学机制,它是指酶介导的将磷酸基团添加到分子上的过程。多位点磷酸化是指将磷酸基团添加到单个分子的多个位点上,它可以是分布式的或持续性的。分布式系统需要酶和底物多次结合才能添加多个磷酸基团,这种系统可能是双稳态的。相比之下,持续性系统只需要一次结合就能添加所有的磷酸基团,最近的研究表明这种系统是全局稳定的。然而,这一全局收敛结果仅针对持续性磷酸化/去磷酸化的一种特定机制得到证明(即所有催化反应都是可逆的)。因此,我们将这一结果进行推广,以适用于每个反应可能是不可逆的持续性磷酸化网络,同时也考虑到可能的产物抑制。我们通过首先定义一个包含所有这些机制的全面持续性网络来实现这一点,然后引用马尔孔德斯·德·弗雷塔斯等人最近的研究结果,这些结果通过单调系统理论和网络/图简化(对应于去除中间复合物)来断言全局收敛。我们的结果构成了一个案例研究,探讨了在向网络中添加或从网络中移除反应和/或中间复合物时,何时全局收敛得以保持的问题

相似文献

1
An all-encompassing global convergence result for processive multisite phosphorylation systems.关于持续性多位点磷酸化系统的一个全面的全局收敛结果。
Math Biosci. 2017 Sep;291:1-9. doi: 10.1016/j.mbs.2017.05.006. Epub 2017 Jun 29.
2
A global convergence result for processive multisite phosphorylation systems.进行性多位点磷酸化系统的全局收敛结果。
Bull Math Biol. 2015 Jan;77(1):126-55. doi: 10.1007/s11538-014-0054-4. Epub 2014 Dec 31.
3
Stability analysis of the Michaelis-Menten approximation of a mixed mechanism of a phosphorylation system.磷酸化系统混合机制的米氏近似的稳定性分析。
Math Biosci. 2018 Jul;301:159-166. doi: 10.1016/j.mbs.2018.05.001. Epub 2018 May 5.
4
Precluding oscillations in Michaelis-Menten approximations of dual-site phosphorylation systems.排除双位点磷酸化系统中米氏方程近似的震荡。
Math Biosci. 2018 Dec;306:56-59. doi: 10.1016/j.mbs.2018.10.008. Epub 2018 Oct 26.
5
Versatile regulation of multisite protein phosphorylation by the order of phosphate processing and protein-protein interactions.通过磷酸化处理顺序和蛋白质-蛋白质相互作用对多位点蛋白质磷酸化进行多功能调控。
FEBS J. 2007 Feb;274(4):1046-61. doi: 10.1111/j.1742-4658.2007.05653.x. Epub 2007 Jan 25.
6
Oscillations and bistability in a model of ERK regulation.细胞外信号调节激酶(ERK)调控模型中的振荡与双稳性
J Math Biol. 2019 Sep;79(4):1515-1549. doi: 10.1007/s00285-019-01402-y. Epub 2019 Jul 25.
7
Long-term dynamics of multisite phosphorylation.多位点磷酸化的长期动力学
Mol Biol Cell. 2016 Jul 15;27(14):2331-40. doi: 10.1091/mbc.E16-03-0137. Epub 2016 May 25.
8
Influence of diffusion on the kinetics of multisite phosphorylation.扩散对多位点磷酸化动力学的影响。
Protein Sci. 2016 Jan;25(1):244-54. doi: 10.1002/pro.2722. Epub 2015 Jul 7.
9
Symmetry breaking meets multisite modification.对称破缺与多位点修饰相遇。
Elife. 2021 May 21;10:e65358. doi: 10.7554/eLife.65358.
10
Emergence of Oscillations in a Mixed-Mechanism Phosphorylation System.混合机制磷酸化系统中振动态的出现。
Bull Math Biol. 2019 Jun;81(6):1829-1852. doi: 10.1007/s11538-019-00580-6. Epub 2019 Mar 4.

引用本文的文献

1
Network regulation meets substrate modification chemistry.网络调控与底物修饰化学。
J R Soc Interface. 2023 Feb;20(199):20220510. doi: 10.1098/rsif.2022.0510. Epub 2023 Feb 1.
2
Symmetry breaking meets multisite modification.对称破缺与多位点修饰相遇。
Elife. 2021 May 21;10:e65358. doi: 10.7554/eLife.65358.
3
Exploring cyclic networks of multisite modification reveals origins of information processing characteristics.探索多部位修饰的循环网络揭示了信息处理特征的起源。
Sci Rep. 2020 Oct 6;10(1):16542. doi: 10.1038/s41598-020-73045-9.
4
A computational framework for a Lyapunov-enabled analysis of biochemical reaction networks.基于李雅普诺夫函数的生化反应网络分析计算框架。
PLoS Comput Biol. 2020 Feb 24;16(2):e1007681. doi: 10.1371/journal.pcbi.1007681. eCollection 2020 Feb.
5
Inference of Multisite Phosphorylation Rate Constants and Their Modulation by Pathogenic Mutations.推断多位点磷酸化速率常数及其由致病突变引起的调节。
Curr Biol. 2020 Mar 9;30(5):877-882.e6. doi: 10.1016/j.cub.2019.12.052. Epub 2020 Feb 13.
6
Oscillations and bistability in a model of ERK regulation.细胞外信号调节激酶(ERK)调控模型中的振荡与双稳性
J Math Biol. 2019 Sep;79(4):1515-1549. doi: 10.1007/s00285-019-01402-y. Epub 2019 Jul 25.
7
Exploring the intrinsic behaviour of multisite phosphorylation systems as part of signalling pathways.探索多部位磷酸化系统作为信号通路一部分的内在行为。
J R Soc Interface. 2018 Jun;15(143). doi: 10.1098/rsif.2018.0109.
8
Dynamics of Posttranslational Modification Systems: Recent Progress and Future Directions.翻译后修饰系统的动力学:最新进展与未来方向。
Biophys J. 2018 Feb 6;114(3):507-515. doi: 10.1016/j.bpj.2017.11.3787.