Eithun Mitchell, Shiu Anne
Department of Mathematical Sciences, Ripon College, Ripon, WI 54971, USA.
Department of Mathematics, Texas A&M University, College Station, TX 77843-3368, USA.
Math Biosci. 2017 Sep;291:1-9. doi: 10.1016/j.mbs.2017.05.006. Epub 2017 Jun 29.
Phosphorylation, the enzyme-mediated addition of a phosphate group to a molecule, is a ubiquitous chemical mechanism in biology. Multisite phosphorylation, the addition of phosphate groups to multiple sites of a single molecule, may be distributive or processive. Distributive systems, which require an enzyme and substrate to bind several times in order to add multiple phosphate groups, can be bistable. Processive systems, in contrast, require only one binding to add all phosphate groups, and were recently shown to be globally stable. However, this global convergence result was proven only for a specific mechanism of processive phosphorylation/dephosphorylation (namely, all catalytic reactions are reversible). Accordingly, we generalize this result to allow for processive phosphorylation networks in which each reaction may be irreversible, and also to account for possible product inhibition. We accomplish this by first defining an all-encompassing processive network that encapsulates all of these schemes, and then appealing to recent results of Marcondes de Freitas et al. that assert global convergence by way of monotone systems theory and network/graph reductions (corresponding to removing intermediate complexes). Our results form a case study into the question of when global convergence is preserved when reactions and/or intermediate complexes are added to or removed from a network.
磷酸化是一种在生物学中普遍存在的化学机制,它是指酶介导的将磷酸基团添加到分子上的过程。多位点磷酸化是指将磷酸基团添加到单个分子的多个位点上,它可以是分布式的或持续性的。分布式系统需要酶和底物多次结合才能添加多个磷酸基团,这种系统可能是双稳态的。相比之下,持续性系统只需要一次结合就能添加所有的磷酸基团,最近的研究表明这种系统是全局稳定的。然而,这一全局收敛结果仅针对持续性磷酸化/去磷酸化的一种特定机制得到证明(即所有催化反应都是可逆的)。因此,我们将这一结果进行推广,以适用于每个反应可能是不可逆的持续性磷酸化网络,同时也考虑到可能的产物抑制。我们通过首先定义一个包含所有这些机制的全面持续性网络来实现这一点,然后引用马尔孔德斯·德·弗雷塔斯等人最近的研究结果,这些结果通过单调系统理论和网络/图简化(对应于去除中间复合物)来断言全局收敛。我们的结果构成了一个案例研究,探讨了在向网络中添加或从网络中移除反应和/或中间复合物时,何时全局收敛得以保持的问题