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采用多种光谱法和分子对接方法研究左氧氟沙星与模型蛋白的相互作用。

The study on interactions between levofloxacin and model proteins by using multi-spectroscopic and molecular docking methods.

机构信息

a College of Life and Environmental Sciences, Minzu University of China , Beijing 100081 , China.

b Beijing Engineering Research Center of Food Environment and Public Health, Minzu University of China , Beijing 100081 , China.

出版信息

J Biomol Struct Dyn. 2018 Jun;36(8):2032-2044. doi: 10.1080/07391102.2017.1341335. Epub 2017 Jun 22.

Abstract

The interactions of levofloxacin (LEV) with lysozyme (LYZ), trypsin and bovine hemoglobin (BHb) were investigated, respectively, by using multi-spectral techniques and molecular docking in vitro. Fluorescence studies showed that LEV quenched LYZ/trypsin fluorescence in a combined quenching ways and BHb fluorescence in a static quenching with binding constants of .14, .51 and .20 × 10 L mol at 298 K, respectively. The thermodynamic parameters demonstrated that hydrophobic forces, hydrogen bonds, and van der Waals forces played the major role in the binding process. The binding distances between LEV and the inner tryptophan residues of LYZ, trypsin, and BHb were calculated to be 4.04, 3.38, and 4.52 nm, respectively. Furthermore, the results of circular dichroism spectra (CD), UV-vis, and three-dimensional fluorescence spectra indicated that the secondary structures of LYZ, trypsin, and BHb were partially changed by LEV with the α-helix percentage of LYZ-LEV system increased while that of BHb-LEV system was decreased, the β-sheet percentage of trypsin-LEV system increased from 41.3 to 42.9%. UV-vis spectral results showed that the binding interactions could cause conformational and some micro-environmental changes of LYZ, trypsin, and BHb. The results of molecular docking revealed that in LYZ and trypsin systems, LEV bound to the active sites residues GLU 35 and ASP 52 of LYZ and trypsin at the active site SER 195, and in BHb system, LEV was located in the central cavity, which was consistent with the results of synchronous fluorescence experiment. Besides, LEV made the activity of LYZ decrease while the activity of trypsin increased.

摘要

本文采用多种光谱技术和分子对接方法,分别研究了左氧氟沙星(LEV)与溶菌酶(LYZ)、胰蛋白酶和牛血红蛋白(BHb)的相互作用。荧光研究表明,LEV 以复合猝灭方式猝灭 LYZ/胰蛋白酶荧光,以静态猝灭方式猝灭 BHb 荧光,结合常数分别为 14、51 和 20×10^4 L/mol,在 298 K 下。热力学参数表明,疏水作用力、氢键和范德华力在结合过程中起主要作用。计算了 LEV 与 LYZ、胰蛋白酶和 BHb 内色氨酸残基之间的结合距离分别为 4.04、3.38 和 4.52nm。此外,圆二色光谱(CD)、紫外-可见光谱和三维荧光光谱的结果表明,LEV 使 LYZ、胰蛋白酶和 BHb 的二级结构部分发生变化,LYZ-LEV 体系的α-螺旋百分比增加,而 BHb-LEV 体系的α-螺旋百分比降低,胰蛋白酶-LEV 体系的β-折叠百分比从 41.3%增加到 42.9%。紫外-可见光谱结果表明,结合相互作用可引起 LYZ、胰蛋白酶和 BHb 的构象和一些微环境变化。分子对接结果表明,在 LYZ 和胰蛋白酶体系中,LEV 与 LYZ 和胰蛋白酶的活性部位残基 GLU 35 和 ASP 52 结合,在 BHb 体系中,LEV 位于中央腔中,与同步荧光实验结果一致。此外,LEV 使 LYZ 的活性降低,而使胰蛋白酶的活性增加。

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