Hodel Florian H, Deglmann Peter, Luber Sandra
Department of Chemistry, University of Zurich , Winterthurerstrasse 190, CH-8057 Zurich, Switzerland.
BASF SE, Carl-Bosch-Straße 38, 67056 Ludwigshafen am Rhein, Germany.
J Chem Theory Comput. 2017 Jul 11;13(7):3348-3358. doi: 10.1021/acs.jctc.7b00214. Epub 2017 Jun 13.
We investigate ligand-exchange reactions of a biomimetic Co(II)-based heterocubane complex in aqueous solution by means of various approaches for consideration of solvent effects. Static calculations based on geometry optimizations carried out in vacuum, with solvent continuum models, or with several explicit solvent molecules have been carried out as well as density functional theory (DFT)-based molecular dynamics simulations. In addition, reaction pathways and barriers have been elucidated via nudged elastic band calculations and metadynamics. The results show that static approaches with approximate consideration of the solvent environment lead to reaction energies, which may change drastically depending on the method employed. A more sophisticated approach is DFT-molecular dynamics at ambient conditions with full solvation, i.e. enough solvent molecules to retain bulk water properties far from the solute, which, however, comes with a much higher computational cost. The investigated example of the exchange of an acetate ligand by a hydroxide demonstrates that entropic contributions can be vital and consideration of electronic energies alone may be a rather rough approximation.
我们通过多种方法研究了一种基于仿生钴(II)的异立方烷配合物在水溶液中的配体交换反应,以考虑溶剂效应。进行了基于在真空中、使用溶剂连续介质模型或使用几个明确溶剂分子进行几何优化的静态计算,以及基于密度泛函理论(DFT)的分子动力学模拟。此外,通过推挤弹性带计算和元动力学阐明了反应途径和势垒。结果表明,对溶剂环境进行近似考虑的静态方法会导致反应能量,其可能会根据所采用的方法而发生巨大变化。一种更复杂的方法是在环境条件下进行具有完全溶剂化的DFT分子动力学,即有足够的溶剂分子以在远离溶质的情况下保持大量水的性质,然而,这伴随着高得多的计算成本。通过氢氧化物交换乙酸根配体的研究示例表明,熵的贡献可能至关重要,仅考虑电子能量可能是一种相当粗略的近似。