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阿尔坎塔雷亚凤梨(Alcantarea patriae Versieux & Wand.)微卫星标记的交叉扩增与特征分析

Cross-amplification and characterization of microsatellite markers in Alcantarea patriae Versieux & Wand.

作者信息

Pereira A G, Bernardi U C S, Manhães V C, Ferreira R S, Miranda F D

机构信息

Programa de Pós-Graduação em Genética e Melhoramento, Laboratório de Bioquímica e Biologia Molecular, Centro de Ciências Agrárias e Engenharias, Universidade Federal do Espírito Santo, Alegre, ES, Brasil

Programa de Pós-Graduação em Genética, Conservação e Biologia Evolutiva, Laboratório de Genética e Reprodução de Plantas, , , Brasil.

出版信息

Genet Mol Res. 2017 May 31;16(2):gmr-16-02-gmr.16029692. doi: 10.4238/gmr16029692.

Abstract

The Alcantarea patriae is a Bromeliaceae endemic to the inselbergs of the Atlantic Forest. This taxon, described in the year of 2007 by Versieux & Wanderley, presents restricted and fragmented distribution outside conservation units. Studies to evaluate the genetic structure of its populations can contribute to the conservation and management strategies for the species. In this study, 31 microsatellite markers, descriptive to six different Bromeliaceae species, were evaluated by cross-amplification tests in 20 individuals of A. patriae. The individuals were collected in the district of Vila Cruzeiro, in the municipality of Jerônimo Monteiro. Twelve markers were polymorphic and 10 monomorphic, with an amplification success rate of 71%. The displayed polymorphism information content was considered high, indicating that the selected markers are informative. The values found for the fixation index were positive and indicated the occurrence of inbreeding. The mean number of alleles was 4.66 (3-6), the mean expected and observed heterozygosities were 0.6605 and 0.4618, respectively. The detection of polymorphic markers was important for future studies of diversity and genetic structuring of natural populations and for germplasm bank creation aiming to contribute to in situ and ex situ conservations of A. patriae.

摘要

爱国水塔花是凤梨科植物,为大西洋森林平顶山所特有。该分类群由韦尔西厄斯和万德利在2007年描述,在保护区外分布受限且碎片化。评估其种群遗传结构的研究有助于制定该物种的保护和管理策略。在本研究中,通过对20株爱国水塔花个体进行交叉扩增试验,评估了针对六种不同凤梨科植物的31个微卫星标记。这些个体采自热罗尼莫·蒙泰罗市的维拉克鲁塞罗区。12个标记为多态性,10个为单态性,扩增成功率为71%。所显示的多态性信息含量被认为较高,表明所选标记具有信息性。固定指数值为正,表明存在近亲繁殖。等位基因平均数为4.66(3 - 6),平均期望杂合度和观察杂合度分别为0.6605和0.4618。多态性标记的检测对于未来自然种群多样性和遗传结构研究以及种质库创建很重要,旨在为爱国水塔花的原地和异地保护做出贡献。

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