Sladek Vladimir, Tvaroška Igor
Institute of Chemistry, Centre for Glycomics, Slovak Academy of Sciences , 84538 Bratislava, Slovakia.
Department of Chemistry, Rikkyo University , 3-34-1 Nishi-Ikebukuro, Tokyo 171-8501, Japan.
J Phys Chem B. 2017 Jun 29;121(25):6148-6162. doi: 10.1021/acs.jpcb.7b03714. Epub 2017 Jun 15.
The energetic effect of water substitution reactions in hexacoordinated [Mn(HO)L] complexes with L = methanol, formic acid, formamide, formate, imidazole, and diphosphate is quantitatively analyzed at the MP2/triple-ζ level of theory. Subsequently, the state-of-the-art open shell symmetry-adapted perturbation theory (SAPT) analysis of the interaction energies of Mn···ligand dimers with selected O-, S-, and N-binding ligands is presented and compared to similar interactions of Mg and Zn ions. We find that the induction energies in the dimers with manganese are almost twice as large as in dimers with magnesium. The total interaction energies rise in the order Mn < Mg < Zn. The calculations of the Mn → Mg replacement reaction suggest that metal-dependent glycosyltransferases influence the binding preference of Mn over Mg by inserting amino acids that coordinate the metal via nitrogen or sulfur into their active site.
在理论的MP2/三重ζ水平上,对六配位[Mn(HO)L]配合物(其中L = 甲醇、甲酸、甲酰胺、甲酸根、咪唑和二磷酸)中的水取代反应的能量效应进行了定量分析。随后,给出了对Mn···配体二聚体与选定的O-、S-和N-结合配体相互作用能的最新开壳层对称适配微扰理论(SAPT)分析,并与Mg和Zn离子的类似相互作用进行了比较。我们发现,含锰二聚体中的诱导能几乎是含镁二聚体中的两倍。总相互作用能按Mn < Mg < Zn的顺序增加。Mn → Mg置换反应的计算表明,金属依赖性糖基转移酶通过将通过氮或硫与金属配位的氨基酸插入其活性位点,影响Mn对Mg的结合偏好。