Centre for Bioinformatics, School of Life Sciences, Pondicherry University, Kalapet, Puducherry, 605014, India.
DBT-Interdisciplinary Program in Life Sciences, Pondicherry University, Kalapet, Puducherry, 605014, India.
Interdiscip Sci. 2018 Dec;10(4):792-804. doi: 10.1007/s12539-017-0243-6. Epub 2017 Jun 16.
Understanding the molecular mode of action of natural product is a key step for developing drugs from them. In this regard, this study is aimed to understand the molecular-level interactions of chemical constituents of Clerodendrum colebrookianum Walp., with anti-hypertensive drug targets using computational approaches. The plant has ethno-medicinal importance for the treatment of hypertension and reported to show activity against anti-hypertensive drug targets-Rho-associated coiled-coil protein kinase (ROCK), angiotensin-converting enzyme, and phosphodiesterase 5 (PDE5). Docking studies showed that three chemical constituents (acteoside, martinoside, and osmanthuside β6) out of 21 reported from the plant to interact with the anti-hypertensive drug targets with good glide score. In addition, they formed H-bond interactions with the key residues Met156/Met157 of ROCK I/ROCK II and Gln817 of PDE5. Further, molecular dynamics (MD) simulation of protein-ligand complexes suggest that H-bond interactions between acteoside/osmanthuside β6 and Met156/Met157 (ROCK I/ROCK II), acteoside and Gln817 (PDE5) were stable. The present investigation suggests that the anti-hypertensive activity of the plant is due to the interaction of acteoside and osmanthuside β6 with ROCK and PDE5 drug targets. The identified molecular mode of binding of the plant constituents could help to design new drugs to treat hypertension.
了解天然产物的分子作用模式是从它们中开发药物的关键步骤。在这方面,本研究旨在使用计算方法了解罗勒科布氏爵床(Clerodendrum colebrookianum Walp.)化学成分与抗高血压药物靶点的分子水平相互作用。该植物具有治疗高血压的民族医学重要性,据报道其对抗高血压药物靶点——Rho 相关卷曲螺旋蛋白激酶(ROCK)、血管紧张素转换酶和磷酸二酯酶 5(PDE5)具有活性。对接研究表明,从该植物中报告的 21 种化学成分之一(咖啡酰阿卡宁、马丁尼苷和β-桂花苷)与抗高血压药物靶点相互作用,具有良好的滑行评分。此外,它们与 ROCK I/ROCK II 的关键残基 Met156/Met157 和 PDE5 的 Gln817 形成氢键相互作用。此外,蛋白质-配体复合物的分子动力学(MD)模拟表明,咖啡酰阿卡宁/β-桂花苷与 Met156/Met157(ROCK I/ROCK II)、咖啡酰阿卡宁与 Gln817(PDE5)之间的氢键相互作用稳定。本研究表明,该植物的抗高血压活性是由于咖啡酰阿卡宁和β-桂花苷与 ROCK 和 PDE5 药物靶点的相互作用。鉴定的植物成分结合的分子模式可以帮助设计治疗高血压的新药。