• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

半经典电子化学:由亚原子力场自动生成的反应轨迹。

Chemistry with semi-classical electrons: reaction trajectories auto-generated by sub-atomistic force fields.

作者信息

Bai Chen, Kale Seyit, Herzfeld Judith

机构信息

Department of Chemistry , Brandeis University , Waltham , MA 02454 , USA . Email:

出版信息

Chem Sci. 2017 Jun 1;8(6):4203-4210. doi: 10.1039/c7sc01181d. Epub 2017 Apr 19.

DOI:10.1039/c7sc01181d
PMID:28626563
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5468998/
Abstract

For a century now, "Lewis dots" have been a mainstay of chemical thinking, teaching and communication. However, chemists have assumed that this semi-classical picture of electrons needs to be abandoned for quantitative work, and the recourse in computational simulations has been to the extremes of first principles treatments of electrons on the one hand and force fields that avoid explicit electrons on the other hand. Given both the successes and limitations of these highly divergent approaches, it seems worth considering whether the Lewis dot picture might be made quantitative after all. Here we review progress to that end, including variations that have been implemented and examples of applications, specifically the acid-base behavior of water, several organic reactions, and electron dynamics in silicon fracture. In each case, the semi-classical approach is highly efficient and generates reasonable and readily interpreted reaction trajectories in turnkey fashion (, without any input about products). Avenues for further progress are also discussed.

摘要

一个世纪以来,“路易斯点式”一直是化学思维、教学和交流的支柱。然而,化学家们认为,对于定量研究,这种电子的半经典图景需要摒弃,在计算模拟中,一方面求助于对电子进行第一性原理处理的极端方法,另一方面则是避免明确考虑电子的力场方法。鉴于这些高度不同的方法既有成功之处也有局限性,似乎值得考虑路易斯点式是否终究可以实现定量。在此,我们综述了为此所取得的进展,包括已实施的变体以及应用实例,特别是水的酸碱行为、几个有机反应以及硅断裂中的电子动力学。在每种情况下,半经典方法都非常高效,并且能以交钥匙方式(无需任何关于产物的输入)生成合理且易于解释的反应轨迹。还讨论了进一步取得进展的途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/5abbfb1b2229/c7sc01181d-p3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/5cbdecb205c9/c7sc01181d-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/644a3097a6f0/c7sc01181d-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/3fe71b0ab678/c7sc01181d-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/86d8c2391762/c7sc01181d-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/308ebd8ec9d4/c7sc01181d-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/5002c580d252/c7sc01181d-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/9b8d28b0b881/c7sc01181d-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/c569b75b9643/c7sc01181d-f8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/a47e20ead767/c7sc01181d-p1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/ee5ee98e8218/c7sc01181d-p2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/5abbfb1b2229/c7sc01181d-p3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/5cbdecb205c9/c7sc01181d-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/644a3097a6f0/c7sc01181d-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/3fe71b0ab678/c7sc01181d-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/86d8c2391762/c7sc01181d-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/308ebd8ec9d4/c7sc01181d-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/5002c580d252/c7sc01181d-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/9b8d28b0b881/c7sc01181d-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/c569b75b9643/c7sc01181d-f8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/a47e20ead767/c7sc01181d-p1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/ee5ee98e8218/c7sc01181d-p2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c5b/5468998/5abbfb1b2229/c7sc01181d-p3.jpg

相似文献

1
Chemistry with semi-classical electrons: reaction trajectories auto-generated by sub-atomistic force fields.半经典电子化学:由亚原子力场自动生成的反应轨迹。
Chem Sci. 2017 Jun 1;8(6):4203-4210. doi: 10.1039/c7sc01181d. Epub 2017 Apr 19.
2
Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).大分子拥挤现象:化学与物理邂逅生物学(瑞士阿斯科纳,2012年6月10日至14日)
Phys Biol. 2013 Aug;10(4):040301. doi: 10.1088/1478-3975/10/4/040301. Epub 2013 Aug 2.
3
A Carbon Is a Carbon Is a Carbon: Orbital-Free Simulations of Hydrocarbon Chemistry without Resort to Atom Types.碳就是碳:无需借助原子类型的烃类化学无轨道模拟。
J Phys Chem A. 2022 Nov 17;126(45):8468-8475. doi: 10.1021/acs.jpca.2c05338. Epub 2022 Nov 4.
4
Molecular dynamics and quantum mechanics of RNA: conformational and chemical change we can believe in.RNA 的分子动力学和量子力学:我们可以相信的构象和化学变化。
Acc Chem Res. 2010 Jan 19;43(1):40-7. doi: 10.1021/ar900093g.
5
Elucidating Hyperconjugation from Electronegativity to Predict Drug Conformational Energy in a High Throughput Manner.从电负性阐明超共轭以高通量方式预测药物构象能
J Chem Inf Model. 2016 Apr 25;56(4):788-801. doi: 10.1021/acs.jcim.6b00012. Epub 2016 Apr 12.
6
Emergence of Linnett's "double quartets" from a model of "Lewis dots".林尼特的“双四重奏”从“路易斯点”模型中出现。
Phys Chem Chem Phys. 2023 Feb 15;25(7):5423-5429. doi: 10.1039/d2cp05648h.
7
Proceedings of the Second Workshop on Theory meets Industry (Erwin-Schrödinger-Institute (ESI), Vienna, Austria, 12-14 June 2007).第二届理论与产业研讨会会议录(2007年6月12日至14日,奥地利维也纳埃尔温·薛定谔研究所)
J Phys Condens Matter. 2008 Feb 13;20(6):060301. doi: 10.1088/0953-8984/20/06/060301. Epub 2008 Jan 24.
8
Fracture of Epoxy Networks Using Atomistic Simulations.使用原子模拟研究环氧树脂网络的断裂
J Phys Chem B. 2024 Jul 25;128(29):7271-7279. doi: 10.1021/acs.jpcb.4c02350. Epub 2024 Jul 11.
9
Explicit polarization: a quantum mechanical framework for developing next generation force fields.显式极化:用于开发下一代力场的量子力学框架。
Acc Chem Res. 2014 Sep 16;47(9):2837-45. doi: 10.1021/ar5002186. Epub 2014 Aug 6.
10
Ab Initio Dot Structures Beyond the Lewis Picture.从头算点结构超越了路易斯点结构。
Molecules. 2021 Feb 9;26(4):911. doi: 10.3390/molecules26040911.

引用本文的文献

1
A Carbon Is a Carbon Is a Carbon: Orbital-Free Simulations of Hydrocarbon Chemistry without Resort to Atom Types.碳就是碳:无需借助原子类型的烃类化学无轨道模拟。
J Phys Chem A. 2022 Nov 17;126(45):8468-8475. doi: 10.1021/acs.jpca.2c05338. Epub 2022 Nov 4.
2
Charge-Dipole Attraction as a Surface Interaction between Water Droplets Immersed in Organic Phases.电荷-偶极吸引力作为浸没在有机相中的水滴之间的表面相互作用。
Langmuir. 2022 Nov 1;38(43):13121-13138. doi: 10.1021/acs.langmuir.2c01828. Epub 2022 Oct 18.
3
Bending the Curve: Molecular Manifestations of Electron Antisymmetry.

本文引用的文献

1
Special Pairs Are Decisive in the Autoionization and Recombination of Water.特殊配对在水的自电离和复合过程中起决定性作用。
J Phys Chem B. 2017 Apr 27;121(16):4213-4219. doi: 10.1021/acs.jpcb.7b02110. Epub 2017 Apr 13.
2
Exchange potentials for semi-classical electrons.
Phys Chem Chem Phys. 2016 Nov 9;18(44):30748-30753. doi: 10.1039/c6cp06100a.
3
Magnetism and Bond Order in Diatomic Molecules Described by Semiclassical Electrons.半经典电子描述的双原子分子中的磁性与键级
弯曲曲线:电子反称性的分子表现。
ChemistryOpen. 2021 Dec;10(12):1197-1201. doi: 10.1002/open.202100234.
4
Revealing excess protons in the infrared spectrum of liquid water.揭示液态水红外光谱中的过量质子。
Sci Rep. 2020 Jul 9;10(1):11320. doi: 10.1038/s41598-020-68116-w.
5
Floating Orbitals Reconsidered: The Difference an Imaginary Part Can Make.
ACS Omega. 2018 Sep 11;3(9):10992-10998. doi: 10.1021/acsomega.8b01528. eCollection 2018 Sep 30.
J Phys Chem B. 2016 Jul 7;120(26):6264-9. doi: 10.1021/acs.jpcb.6b02576. Epub 2016 Jun 1.
4
Surface Propensities of the Self-Ions of Water.水的自离子的表面倾向。
ACS Cent Sci. 2016 Apr 27;2(4):225-31. doi: 10.1021/acscentsci.6b00013. Epub 2016 Mar 28.
5
Why Is MP2-Water "Cooler" and "Denser" than DFT-Water?为什么MP2水比DFT水“更冷”且“密度更大”?
J Phys Chem Lett. 2016 Feb 18;7(4):680-4. doi: 10.1021/acs.jpclett.5b02430. Epub 2016 Feb 1.
6
Transferable pseudoclassical electrons for aufbau of atomic ions.用于构建原子离子的可转移赝经典电子
J Comput Chem. 2014 Jun 5;35(15):1159-64. doi: 10.1002/jcc.23612. Epub 2014 Apr 21.
7
Ion-specific long-range correlations on interfacial water driven by hydrogen bond fluctuations.
J Phys Chem B. 2014 Feb 20;118(7):1861-6. doi: 10.1021/jp411385u. Epub 2014 Feb 6.
8
The Polarizable Atomic Multipole-based AMOEBA Force Field for Proteins.用于蛋白质的基于可极化原子多极矩的AMOEBA力场
J Chem Theory Comput. 2013;9(9):4046-4063. doi: 10.1021/ct4003702.
9
Lewis-inspired representation of dissociable water in clusters and Grotthuss chains.受路易斯启发的簇合物和质子传递链中可离解水的表示法。
J Biol Phys. 2012 Jan;38(1):49-59. doi: 10.1007/s10867-011-9229-5. Epub 2011 Jun 4.
10
Brønsted basicity of the air-water interface.气-水界面的布朗斯特碱性。
Proc Natl Acad Sci U S A. 2012 Nov 13;109(46):18679-83. doi: 10.1073/pnas.1209307109. Epub 2012 Oct 29.