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随机权重函数的蒙特卡罗抽样。

Monte Carlo sampling for stochastic weight functions.

机构信息

Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom

Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom.

出版信息

Proc Natl Acad Sci U S A. 2017 Jul 3;114(27):6924-6929. doi: 10.1073/pnas.1620497114. Epub 2017 Jun 20.

DOI:10.1073/pnas.1620497114
PMID:28634292
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5502596/
Abstract

Conventional Monte Carlo simulations are stochastic in the sense that the acceptance of a trial move is decided by comparing a computed acceptance probability with a random number, uniformly distributed between 0 and 1. Here, we consider the case that the weight determining the acceptance probability itself is fluctuating. This situation is common in many numerical studies. We show that it is possible to construct a rigorous Monte Carlo algorithm that visits points in state space with a probability proportional to their average weight. The same approach may have applications for certain classes of high-throughput experiments and the analysis of noisy datasets.

摘要

传统的蒙特卡罗模拟在随机性方面的特点是,通过将计算得出的接受概率与在 0 到 1 之间均匀分布的随机数进行比较,来决定是否接受一个试探性移动。在这里,我们考虑权重本身波动的情况,这种情况在许多数值研究中很常见。我们表明,可以构建一个严格的蒙特卡罗算法,该算法以与它们的平均权重成比例的概率访问状态空间中的点。这种方法可能适用于某些高通量实验和噪声数据集的分析。

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本文引用的文献

1
Structural analysis of high-dimensional basins of attraction.高维吸引子盆地的结构分析
Phys Rev E. 2016 Sep;94(3-1):031301. doi: 10.1103/PhysRevE.94.031301. Epub 2016 Sep 15.
2
Turning intractable counting into sampling: Computing the configurational entropy of three-dimensional jammed packings.将难以计数转化为抽样:计算三维堆积体的构形熵。
Phys Rev E. 2016 Jan;93(1):012906. doi: 10.1103/PhysRevE.93.012906. Epub 2016 Jan 25.
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Direct determination of the size of basins of attraction of jammed solids.直接确定被堵塞固体吸引域的大小。
Phys Rev Lett. 2011 Jun 17;106(24):245502. doi: 10.1103/PhysRevLett.106.245502.
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Statistically optimal analysis of samples from multiple equilibrium states.来自多个平衡态样本的统计最优分析。
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6
Speed-up of Monte Carlo simulations by sampling of rejected states.通过对被拒绝状态进行采样来加速蒙特卡罗模拟
Proc Natl Acad Sci U S A. 2004 Dec 21;101(51):17571-5. doi: 10.1073/pnas.0407950101. Epub 2004 Dec 10.
7
Parallel excluded volume tempering for polymer melts.聚合物熔体的平行排斥体积回火法。
Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Jan;63(1 Pt 2):016701. doi: 10.1103/PhysRevE.63.016701. Epub 2000 Dec 22.