• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

极化密度嵌入模型中非静电排斥的优化与可转移性

Optimization and transferability of non-electrostatic repulsion in the polarizable density embedding model.

作者信息

Hršak Dalibor, Olsen Jógvan Magnus Haugaard, Kongsted Jacob

机构信息

Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, Odense M, 5230, Denmark.

出版信息

J Comput Chem. 2017 Sep 15;38(24):2108-2117. doi: 10.1002/jcc.24859. Epub 2017 Jun 22.

DOI:10.1002/jcc.24859
PMID:28643344
Abstract

Embedding techniques in combination with response theory represent a successful approach to calculate molecular properties and excited states in large molecular systems such as solutions and proteins. Recently, the polarizable embedding model has been extended by introducing explicit electronic densities of the molecules in the nearest environment, resulting in the polarizable density embedding (PDE) model. This improvement provides a better description of the intermolecular interactions at short distances. However, the electronic densities of the environment molecules are calculated in isolation, which results in overestimation of the non-electrostatic repulsion, thereby requiring a scaling of this term. In this work, an optimal scaling factor for the non-electrostatic repulsion term is examined by comparing intermolecular interaction energies obtained with embedding techniques to reference interaction energies calculated on the basis of full quantum-mechanical calculations. The obtained optimal factors are used in PDE calculations of various ground- and excited-state properties of molecules embedded in solvents described as polarizable environments. © 2017 Wiley Periodicals, Inc.

摘要

嵌入技术与响应理论相结合是一种成功的方法,可用于计算大分子体系(如溶液和蛋白质)的分子性质和激发态。最近,通过引入最近环境中分子的显式电子密度,可极化嵌入模型得到了扩展,从而产生了可极化密度嵌入(PDE)模型。这一改进能更好地描述短距离内的分子间相互作用。然而,环境分子的电子密度是孤立计算的,这导致非静电排斥的高估,因此需要对该项进行缩放。在这项工作中,通过将嵌入技术获得的分子间相互作用能与基于全量子力学计算得到的参考相互作用能进行比较,研究了非静电排斥项的最佳缩放因子。所获得的最佳因子用于对嵌入可极化环境溶剂中的分子的各种基态和激发态性质进行PDE计算。© 2017威利期刊公司。

相似文献

1
Optimization and transferability of non-electrostatic repulsion in the polarizable density embedding model.极化密度嵌入模型中非静电排斥的优化与可转移性
J Comput Chem. 2017 Sep 15;38(24):2108-2117. doi: 10.1002/jcc.24859. Epub 2017 Jun 22.
2
Exchange Repulsion in Quantum Mechanical/Effective Fragment Potential Excitation Energies: Beyond Polarizable Embedding.量子力学/有效片段势能激发能中的交换排斥:超越极化嵌入。
J Chem Theory Comput. 2020 Oct 13;16(10):6408-6417. doi: 10.1021/acs.jctc.9b01156. Epub 2020 Aug 28.
3
Polarizable Density Embedding Coupled Cluster Method.可极化密度嵌入耦合簇方法
J Chem Theory Comput. 2018 Mar 13;14(3):1351-1360. doi: 10.1021/acs.jctc.7b01153. Epub 2018 Feb 23.
4
Polarizable density embedding: a new QM/QM/MM-based computational strategy.可极化密度嵌入:一种基于量子力学/量子力学/分子力学的新计算策略。
J Phys Chem A. 2015 May 28;119(21):5344-55. doi: 10.1021/jp510138k. Epub 2015 Feb 2.
5
Density-Dependent Formulation of Dispersion-Repulsion Interactions in Hybrid Multiscale Quantum/Molecular Mechanics (QM/MM) Models.混合多尺度量子/分子力学(QM/MM)模型中色散-排斥相互作用的密度相关公式。
J Chem Theory Comput. 2018 Mar 13;14(3):1671-1681. doi: 10.1021/acs.jctc.7b00912. Epub 2018 Feb 22.
6
Embedding Beyond Electrostatics: The Extended Polarizable Density Embedding Model.超越静电场的嵌入:扩展极化密度嵌入模型。
J Phys Chem B. 2023 Apr 13;127(14):3248-3256. doi: 10.1021/acs.jpcb.2c08721. Epub 2023 Apr 1.
7
Excited states in large molecular systems through polarizable embedding.
Phys Chem Chem Phys. 2016 Jul 27;18(30):20234-50. doi: 10.1039/c6cp03834d.
8
Embedding beyond electrostatics-The role of wave function confinement.
J Chem Phys. 2016 Sep 14;145(10):104102. doi: 10.1063/1.4962367.
9
Analytic Excited State Gradients for the QM/MM Polarizable Embedded Second-Order Algebraic Diagrammatic Construction for the Polarization Propagator PE-ADC(2).QM/MM 极化嵌入二阶代数图论极化传播子的解析激发态梯度(PE-ADC(2))。
J Chem Theory Comput. 2018 Sep 11;14(9):4640-4650. doi: 10.1021/acs.jctc.8b00396. Epub 2018 Aug 10.
10
Importance of the intermolecular Pauli repulsion in embedding calculations for molecular properties: the case of excitation energies for a chromophore in hydrogen-bonded environments.在分子性质的嵌入计算中,分子间 Pauli 排斥的重要性:氢键环境中发色团激发能的情况。
J Phys Chem A. 2011 Sep 8;115(35):10018-26. doi: 10.1021/jp203192g. Epub 2011 Aug 4.