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一株邻苯二甲酸酯降解分枝杆菌Mycobacterium sp. YC-RL4的全基因组序列

Complete genome sequence of a phthalic acid esters degrading Mycobacterium sp. YC-RL4.

作者信息

Ren Lei, Fan Shuanghu, Wang Junhuan, Ruth Nahurira, Qiao Cheng, Jia Yang, Yan Yanchun

机构信息

Chinese Academy of Agricultural Sciences, Graduate School, No.12 Zhongguancun South Street, Beijing, China.

Chinese Academy of Agricultural Sciences, Graduate School, No.12 Zhongguancun South Street, Beijing, China.

出版信息

Braz J Microbiol. 2017 Oct-Dec;48(4):607-609. doi: 10.1016/j.bjm.2016.09.022. Epub 2017 Jun 3.

Abstract

Mycobacterium sp. YC-RL4 is capable of utilizing a broad range of phthalic acid esters (PAEs) as sole source of carbon and energy for growth. The preliminary studies demonstrated its high degrading efficiency and good performance during the bioprocess with environmental samples. Here, we present the complete genome of Mycobacterium sp. YC-RL4, which consists of one circular chromosome (5,801,417bp) and one plasmid (252,568bp). The genomic analysis and gene annotation were performed and many potential genes responsible for the biodegradation of PAEs were identified from the genome. These results may advance the investigation of bioremediation of PAEs-contaminated environments by strain YC-RL4.

摘要

分枝杆菌属菌株YC-RL4能够利用多种邻苯二甲酸酯(PAEs)作为唯一的碳源和能源进行生长。初步研究表明,在处理环境样品的生物过程中,它具有很高的降解效率和良好的性能。在此,我们展示了分枝杆菌属菌株YC-RL4的完整基因组,它由一条环状染色体(5,801,417bp)和一个质粒(252,568bp)组成。进行了基因组分析和基因注释,并从基因组中鉴定出许多负责PAEs生物降解的潜在基因。这些结果可能会推动对菌株YC-RL4修复PAEs污染环境的研究。

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1
Biodegradation of phthalic acid esters by a newly isolated Mycobacterium sp. YC-RL4 and the bioprocess with environmental samples.
Environ Sci Pollut Res Int. 2016 Aug;23(16):16609-19. doi: 10.1007/s11356-016-6829-4. Epub 2016 May 14.
2
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing.
Nat Biotechnol. 2015 Jun;33(6):623-30. doi: 10.1038/nbt.3238. Epub 2015 May 25.
3
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.
Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.
4
Biodegradation of di-n-butyl phthalate by an isolated Gordonia sp. strain QH-11: Genetic identification and degradation kinetics.
J Hazard Mater. 2012 Jun 30;221-222:80-5. doi: 10.1016/j.jhazmat.2012.04.010. Epub 2012 Apr 10.
5
NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy.
Nucleic Acids Res. 2012 Jan;40(Database issue):D130-5. doi: 10.1093/nar/gkr1079. Epub 2011 Nov 24.
7
Involvement of a novel ABC transporter and monoalkyl phthalate ester hydrolase in phthalate ester catabolism by Rhodococcus jostii RHA1.
Appl Environ Microbiol. 2010 Mar;76(5):1516-23. doi: 10.1128/AEM.02621-09. Epub 2009 Dec 28.
8
KEGG for linking genomes to life and the environment.
Nucleic Acids Res. 2008 Jan;36(Database issue):D480-4. doi: 10.1093/nar/gkm882. Epub 2007 Dec 12.
9
A mono-2-ethylhexyl phthalate hydrolase from a Gordonia sp. that is able to dissimilate di-2-ethylhexyl phthalate.
Appl Environ Microbiol. 2006 Apr;72(4):2394-9. doi: 10.1128/AEM.72.4.2394-2399.2006.
10
Biodegradation of an endocrine-disrupting chemical, di-2-ethylhexyl phthalate, by Bacillus subtilis No. 66.
Appl Microbiol Biotechnol. 2005 Mar;66(6):702-10. doi: 10.1007/s00253-004-1683-6. Epub 2004 Oct 23.

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