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顶复门生物无机焦磷酸酶的结构和生化特性研究。

Structural and Biochemical Characterization of Apicomplexan Inorganic Pyrophosphatases.

机构信息

Molecular Medicine Group, International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi, 110067, India.

Department of Biotechnology, Jamia Hamdard, New Delhi, 110063, India.

出版信息

Sci Rep. 2017 Jul 12;7(1):5255. doi: 10.1038/s41598-017-05234-y.

Abstract

Inorganic pyrophosphatases (PPase) participate in energy cycling and they are essential for growth and survival of organisms. Here we report extensive structural and functional characterization of soluble PPases from the human parasites Plasmodium falciparum (PfPPase) and Toxoplasma gondii (TgPPase). Our results show that PfPPase is a cytosolic enzyme whose gene expression is upregulated during parasite asexual stages. Cambialistic PfPPase actively hydrolyzes linear short chain polyphosphates like PP, polyP and ATP in the presence of Zn. A remarkable new feature of PfPPase is the low complexity asparagine-rich N-terminal region that mediates its dimerization. Deletion of N-region has an unexpected and substantial effect on the stability of PfPPase domain, resulting in aggregation and significant loss of enzyme activity. Significantly, the crystal structures of PfPPase and TgPPase reveal unusual and unprecedented dimeric organizations and provide new fundamental insights into the variety of oligomeric assemblies possible in eukaryotic inorganic PPases.

摘要

无机焦磷酸酶(PPase)参与能量循环,是生物生长和存活所必需的。在这里,我们报告了来自人类寄生虫疟原虫(PfPPase)和刚地弓形虫(TgPPase)的可溶性 PPase 的广泛结构和功能特征。我们的结果表明,PfPPase 是一种胞质酶,其基因表达在寄生虫无性阶段上调。在锌存在的情况下,具有转换性的 PfPPase 可积极水解线性短链多磷酸盐,如 PP、多聚 P 和 ATP。PfPPase 的一个显著新特征是低复杂度富含天冬酰胺的 N 端区域,该区域介导其二聚化。N 区的缺失对 PfPPase 结构域的稳定性有出乎意料的重大影响,导致聚集和酶活性显著丧失。重要的是,PfPPase 和 TgPPase 的晶体结构揭示了异常和前所未有的二聚体组织,并为真核无机 PPase 中可能存在的各种寡聚体组装提供了新的基本见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2bd1/5507929/9fe11da128e7/41598_2017_5234_Fig1_HTML.jpg

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本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
2
Discovery of Allosteric and Selective Inhibitors of Inorganic Pyrophosphatase from Mycobacterium tuberculosis.
ACS Chem Biol. 2016 Nov 18;11(11):3084-3092. doi: 10.1021/acschembio.6b00510. Epub 2016 Sep 26.
3
Structural and Functional Highlights of Vacuolar Soluble Protein 1 from Pathogen Trypanosoma brucei brucei.
J Biol Chem. 2015 Dec 18;290(51):30498-513. doi: 10.1074/jbc.M115.674176. Epub 2015 Oct 22.
4
Functional analysis of sirtuin genes in multiple Plasmodium falciparum strains.
PLoS One. 2015 Mar 17;10(3):e0118865. doi: 10.1371/journal.pone.0118865. eCollection 2015.
6
Evidence for the role of vacuolar soluble pyrophosphatase and inorganic polyphosphate in Trypanosoma cruzi persistence.
Mol Microbiol. 2013 Nov;90(4):699-715. doi: 10.1111/mmi.12392. Epub 2013 Sep 30.
7
Inorganic pyrophosphatases: one substrate, three mechanisms.
FEBS Lett. 2013 Jun 27;587(13):1863-9. doi: 10.1016/j.febslet.2013.05.003. Epub 2013 May 16.
8
Inorganic pyrophosphatase defects lead to cell cycle arrest and autophagic cell death through NAD+ depletion in fermenting yeast.
J Biol Chem. 2013 May 3;288(18):13082-92. doi: 10.1074/jbc.M112.439349. Epub 2013 Mar 11.
10
Towards automated crystallographic structure refinement with phenix.refine.
Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):352-67. doi: 10.1107/S0907444912001308. Epub 2012 Mar 16.

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