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霍夫迈斯特阴离子对蛋白质表面水结构的影响。

The effect of Hofmeister anions on water structure at protein surfaces.

作者信息

Lee Euihyun, Choi Jun-Ho, Cho Minhaeng

机构信息

Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS), Korea University, Seoul 02841, Republic of Korea.

出版信息

Phys Chem Chem Phys. 2017 Aug 2;19(30):20008-20015. doi: 10.1039/c7cp02826a.

Abstract

To understand the effects of specific ions on protein-water interactions and the thermodynamic stability of proteins in salt solutions, we use a molecular dynamics (MD) simulation to examine the water structure, orientational distribution, and dynamics near the surface of ubiquitin. In particular, we consider NaCl, NaBF, NaSCN, and NaClO salt solutions containing ubiquitin, where the anions of the latter three salts are well-known chaotropic ions in the Hofmiester anion series. The number of hydrogen bonds (H-bonds) per water molecule is found to decrease significantly at the ubiquitin-water interface, indicating a significant disruption of the water H-bonding network. The distribution of the water H-bond numbers near the protein surface is modulated by dissolved ions, and the extent of the ion effect on the H-bonding network structure follows the order of the Hofmeister anion series, while there are no specific ion effects on water properties at distances larger than 5 Å from the protein surface. From detailed analyses of the surface area, volume, and root-mean-square deviation (RMSD) of ubiquitin, we show that changes in the properties of the protein could originate from the disruption of the water H-bond network induced by ions with a higher affinity for the protein surface instead of direct protein residue-ion interactions. An interesting observation made here is that the orientational distribution of water molecules at the protein-water interface is close to random, but there is a slight preference for interfacial water molecules with a straddle structure within 2.5 Å of the protein surface, where one of the two OH groups points away from the protein surface and the other points toward the surface. In addition, comparing the MD simulation results for ubiquitin solutions with dissolved NaSCN and KSCN, we show that Na affects the water H-bonding structure at the protein surface more than K. It is clear that the H-bonding network structure of water more than one water layer away from the protein surface is not distinguishably different from that of neat water. We thus anticipate that the present work will provide insights into the scale of specific ion effects on the H-bonding structure and orientational distribution of water in the vicinity of protein surfaces in aqueous solutions.

摘要

为了理解特定离子对蛋白质 - 水相互作用以及蛋白质在盐溶液中的热力学稳定性的影响,我们使用分子动力学(MD)模拟来研究泛素表面附近的水结构、取向分布和动力学。具体而言,我们考虑含有泛素的NaCl、NaBF、NaSCN和NaClO盐溶液,其中后三种盐的阴离子是霍夫迈斯特阴离子系列中著名的离液序列离子。发现每个水分子的氢键(H键)数量在泛素 - 水界面处显著减少,这表明水氢键网络受到了显著破坏。蛋白质表面附近水氢键数量的分布受到溶解离子的调节,离子对氢键网络结构的影响程度遵循霍夫迈斯特阴离子系列的顺序,而在距离蛋白质表面大于5 Å处,离子对水性质没有特定影响。通过对泛素的表面积、体积和均方根偏差(RMSD)的详细分析,我们表明蛋白质性质的变化可能源于对蛋白质表面具有更高亲和力的离子引起的水氢键网络的破坏,而不是蛋白质残基与离子的直接相互作用。这里一个有趣的观察结果是,蛋白质 - 水界面处水分子的取向分布接近随机,但在蛋白质表面2.5 Å范围内,跨骑结构的界面水分子存在轻微偏好,其中两个OH基团之一指向远离蛋白质表面的方向,另一个指向表面。此外,比较含有溶解的NaSCN和KSCN的泛素溶液的MD模拟结果,我们表明Na对蛋白质表面水氢键结构的影响比K更大。很明显,距离蛋白质表面超过一个水层的水的氢键网络结构与纯水的结构没有明显差异。因此,我们预计本工作将为水溶液中蛋白质表面附近水的氢键结构和取向分布的特定离子效应规模提供见解。

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