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基于探针熔解曲线分析的多重连接依赖式探针扩增技术同时检测十种细菌病原体。

Simultaneous Identification of Ten Bacterial Pathogens Using the Multiplex Ligation Reaction Based on the Probe Melting Curve Analysis.

机构信息

Shenzhen Center for Disease Control and Prevention, Shenzhen, 518020, China.

School of Life Sciences, Shenzhen University, Shenzhen, 518000, Guangdong, China.

出版信息

Sci Rep. 2017 Jul 19;7(1):5902. doi: 10.1038/s41598-017-06348-z.

Abstract

Pathogenic Vibrio spp., Aeromonas spp. and Plesiomonas shigelloides are associated with human gastroenteritis and wound infections, as well as fish diseases. The comprehensive and accurate identification of these pathogens is crucial for the current public health. The present study describes the development of a multiplex assay for the simultaneous identification of ten bacterial pathogens in a single reaction by using a multiplex ligation reaction based on probe melting curve analysis (MLMA). The specificity for target genes was 100%, as assessed with a panel of 67 bacterial pathogens, which indicated no cross-reactions. The detection limit of this assay ranged from 0.8 × 10 CFU/mL to 1.5 × 10 CFU/mL at the pure bacterial culture level and from 0.1 ng to 1.0 ng at the DNA level. The MLMA assay was used to detect ten species of pathogens in 269 clinical and seafood samples, and for further validation, the results were compared with the conventional culture method. The results indicated greater than 90% sensitivity and 100% specificity for each bacterial pathogen tested, and the kappa correlation for all the pathogens ranged from 0.95 to 1.00. Overall, this assay is well suited for public health laboratories for its high throughput, accuracy, and low cost.

摘要

致病性弧菌、气单胞菌和类志贺邻单胞菌与人类肠胃炎和伤口感染以及鱼类疾病有关。这些病原体的全面和准确识别对当前的公共卫生至关重要。本研究描述了一种多重连接反应基于探针熔解曲线分析(MLMA)的单一反应中同时鉴定十种细菌病原体的多重分析方法。用 67 种细菌病原体进行评估,其靶基因的特异性为 100%,表明没有交叉反应。该检测方法的检测限在纯细菌培养物水平上为 0.8×10 CFU/mL 至 1.5×10 CFU/mL,在 DNA 水平上为 0.1ng 至 1.0ng。该 MLMA 分析方法用于检测 269 份临床和海鲜样本中的十种病原体,为了进一步验证,将结果与常规培养方法进行比较。结果表明,对于每种检测的细菌病原体,该方法的敏感性均大于 90%,特异性为 100%,所有病原体的kappa 相关系数均在 0.95 至 1.00 之间。总体而言,该检测方法具有高通量、准确性和低成本的特点,非常适合公共卫生实验室使用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/09de/5517457/5a425552ffa4/41598_2017_6348_Fig1_HTML.jpg

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