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Prokka: rapid prokaryotic genome annotation.
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
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SOAP: short oligonucleotide alignment program.
Bioinformatics. 2008 Mar 1;24(5):713-4. doi: 10.1093/bioinformatics/btn025. Epub 2008 Jan 28.
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Identifying bacterial genes and endosymbiont DNA with Glimmer.
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
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The KEGG resource for deciphering the genome.
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D277-80. doi: 10.1093/nar/gkh063.
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The COG database: new developments in phylogenetic classification of proteins from complete genomes.
Nucleic Acids Res. 2001 Jan 1;29(1):22-8. doi: 10.1093/nar/29.1.22.
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Marine Pseudoalteromonas species are associated with higher organisms and produce biologically active extracellular agents.
FEMS Microbiol Ecol. 1999 Dec 1;30(4):285-293. doi: 10.1111/j.1574-6941.1999.tb00656.x.
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tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
Nucleic Acids Res. 1997 Mar 1;25(5):955-64. doi: 10.1093/nar/25.5.955.

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