Department of Biomedical Chemistry, Graduate School of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan; Department of Biochemistry, Ahmadu Bello University, Zaria 2222, Nigeria.
Department of Biomedical Chemistry, Graduate School of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan; School of Tropical Medicine and Global Health, Nagasaki University 1-12-4, Sakamoto, Nagasaki 852-8523, Japan.
Biochim Biophys Acta Gen Subj. 2017 Nov;1861(11 Pt A):2830-2842. doi: 10.1016/j.bbagen.2017.07.028. Epub 2017 Aug 2.
In general, glycerol kinases (GKs) are transferases that catalyze phospho group transfer from ATP to glycerol, and the mechanism was suggested to be random bi-bi. The reverse reaction i.e. phospho transfer from glycerol 3-phosphate (G3P) to ADP is only physiologically feasible by the African trypanosome GK. In contrast to other GKs the mechanism of Trypanosoma brucei gambiense glycerol kinase (TbgGK) was shown to be in an ordered fashion, and proceeding via autophosphorylation. From the unique reaction mechanism of TbgGK, we envisaged its potential to possess phosphatase activity in addition to being a kinase.
Our hypothesis was tested by spectrophotometric and LC-MS/MS analyses using paranitrophenyl phosphate (pNPP) and TbgGK's natural substrate, G3P respectively. Furthermore, protein X-ray crystallography and site-directed mutagenesis were performed to examine pNPP binding, catalytic residues, and the possible reaction mechanism.
In addition to its widely known and expected phosphotransferase (class II) activity, TbgGK can efficiently facilitate the hydrolytic cleavage of phosphoric anhydride bonds (a class III property). This phosphatase activity followed the classical Michaelis-Menten pattern and was competitively inhibited by ADP and G3P, suggesting a common catalytic site for both activities (phosphatase and kinase). The structure of the TGK-pNPP complex, and structure-guided mutagenesis implicated T276 to be important for the catalysis. Remarkably, we captured a crystallographic molecular snapshot of the phosphorylated T276 reaction intermediate.
We conclude that TbgGK has both kinase and phosphatase activities.
This is the first report on a bifunctional kinase/phosphatase enzyme among members of the sugar kinase family.
一般来说,甘油激酶(GK)是一种转移酶,能够催化 ATP 上的磷酸基团转移到甘油上,其机制被认为是随机的双分子反应。只有非洲锥虫的甘油激酶能够实现甘油 3-磷酸(G3P)到 ADP 的磷酸基团逆向转移,这在生理上是可行的。与其他 GK 不同,布氏冈比亚锥虫甘油激酶(TbgGK)的机制被证明是有序的,并通过自磷酸化进行。基于 TbgGK 独特的反应机制,我们设想它除了具有激酶活性外,还可能具有磷酸酶活性。
我们使用对硝基苯磷酸(pNPP)和 TbgGK 的天然底物甘油 3-磷酸(G3P)分别通过分光光度法和 LC-MS/MS 分析来验证我们的假设。此外,还进行了蛋白质 X 射线晶体学和定点突变实验,以检查 pNPP 结合、催化残基和可能的反应机制。
除了其广泛已知的和预期的磷酸转移酶(II 类)活性外,TbgGK 还能有效地促进磷酸酐键的水解断裂(III 类性质)。这种磷酸酶活性遵循经典的米氏-门登哈特定律,并且被 ADP 和 G3P 竞争性抑制,这表明两种活性(激酶和磷酸酶)具有共同的催化位点。TGK-pNPP 复合物的结构和结构导向突变表明 T276 对催化很重要。值得注意的是,我们捕获了一个磷酸化 T276 反应中间体的结晶学分子快照。
我们得出结论,TbgGK 具有激酶和磷酸酶活性。
这是糖激酶家族成员中首次报道的双功能激酶/磷酸酶酶。