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病毒出芽过程中BST-2卷曲螺旋的弯曲

Bending of the BST-2 coiled-coil during viral budding.

作者信息

Ozcan Kadir A, Berndsen Christopher E

机构信息

Department of Chemistry and Biochemistry, James Madison University, Harrisonburg, Virginia.

出版信息

Proteins. 2017 Nov;85(11):2081-2087. doi: 10.1002/prot.25362. Epub 2017 Aug 12.

DOI:10.1002/prot.25362
PMID:28779494
Abstract

BST-2/tetherin is a human extracellular transmembrane protein that serves as a host defense factor against HIV-1 and other viruses by inhibiting viral spreading. Structurally, BST-2 is a homo-dimeric coiled-coil that is connected to the host cell membrane by N and C terminal transmembrane anchors. The C-terminal membrane anchor of BST-2 is inserted into the budding virus while the N-terminal membrane anchor remains in the host cell membrane creating a viral tether. The structural mechanism of viral budding and tethering as mediated by BST-2 is not clear. To more fully describe the mechanism of viral tethering, we created a model of BST-2 embedded in a membrane and used steered molecular dynamics to simulate the transition from the host cell membrane associated form to the cell-virus membrane bridging form. We observed that BST-2 did not transition as a rigid structure, but instead bent at positions with a reduced interface between the helices of the coiled-coil. The simulations for the human BST-2 were then compared with simulations on the mouse homolog, which has no apparent weak spots. We observed that the mouse homolog spread the bending across the ectodomain, rather than breaking at discrete points as observed with the human homolog. These simulations support previous biochemical and cellular work suggesting some flexibility in the coiled-coil is necessary for viral tethering, while also highlighting how subtle changes in protein sequence can influence the dynamics and stability of proteins with overall similar structure.

摘要

BST-2/束缚素是一种人类细胞外跨膜蛋白,通过抑制病毒传播作为针对HIV-1和其他病毒的宿主防御因子。在结构上,BST-2是一种同型二聚体卷曲螺旋结构,通过N端和C端跨膜锚定与宿主细胞膜相连。BST-2的C端膜锚插入出芽病毒中,而N端膜锚保留在宿主细胞膜中,形成病毒束缚。由BST-2介导的病毒出芽和束缚的结构机制尚不清楚。为了更全面地描述病毒束缚机制,我们构建了一个嵌入膜中的BST-2模型,并使用引导分子动力学来模拟从宿主细胞膜相关形式到细胞-病毒膜桥接形式的转变。我们观察到,BST-2并非作为刚性结构转变,而是在卷曲螺旋螺旋之间界面减少的位置弯曲。然后将人类BST-2的模拟结果与小鼠同源物的模拟结果进行比较,小鼠同源物没有明显的弱点。我们观察到,小鼠同源物将弯曲分布在胞外域,而不是像人类同源物那样在离散点断裂。这些模拟结果支持了先前的生化和细胞研究工作,表明卷曲螺旋中的一些灵活性对于病毒束缚是必要的,同时也突出了蛋白质序列的细微变化如何影响具有总体相似结构的蛋白质的动力学和稳定性。

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Bending of the BST-2 coiled-coil during viral budding.病毒出芽过程中BST-2卷曲螺旋的弯曲
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2
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Viruses. 2023 Jan 30;15(2):393. doi: 10.3390/v15020393.
2
Bone marrow stromal antigen 2 (BST-2) genetic variants influence expression levels and disease outcome in HIV-1 chronically infected patients.骨髓基质抗原2(BST-2)基因变异影响HIV-1慢性感染患者的表达水平和疾病转归。
Retrovirology. 2022 Jan 26;19(1):3. doi: 10.1186/s12977-022-00588-2.
3
Resilience of BST-2/Tetherin structure to single amino acid substitutions.
BST-2/拴系蛋白结构对单个氨基酸取代的耐受性。
PeerJ. 2019 May 31;7:e7043. doi: 10.7717/peerj.7043. eCollection 2019.
4
From APOBEC to ZAP: Diverse mechanisms used by cellular restriction factors to inhibit virus infections.从 APOBEC 到 ZAP:细胞限制因子抑制病毒感染的多种机制。
Biochim Biophys Acta Mol Cell Res. 2019 Mar;1866(3):382-394. doi: 10.1016/j.bbamcr.2018.09.012. Epub 2018 Oct 2.